miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 175610 0.81 0.890818
Target:  5'- aUACCCUUUAAUACgUAAGCcGUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGgAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 174970 0.7 0.999962
Target:  5'- -aAUUCU--AACACUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAaaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 174590 0.84 0.782356
Target:  5'- -gACCgagUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 174462 0.75 0.991928
Target:  5'- -aAUCUUUUuACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAuUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 173872 0.71 0.999777
Target:  5'- -aACCUUaggauuuauagagUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGA-------------AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 173177 0.76 0.985816
Target:  5'- -aACCCcUUAACuCCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGaAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 172812 1.06 0.078691
Target:  5'- uUUACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 172723 0.71 0.999639
Target:  5'- -aACUUUaUAAUACCUAAGUUAUAUAu -3'
miRNA:   3'- aaUGGGAaAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 172604 0.96 0.261114
Target:  5'- -aACCCUUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 170846 0.92 0.401575
Target:  5'- aUACCCUUUAACAUgUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGgAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 170699 0.95 0.275325
Target:  5'- -aACUCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 170585 0.73 0.998609
Target:  5'- -aACCUUgUAACACCUGAcCUAUAUAu -3'
miRNA:   3'- aaUGGGAaAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 170531 0.81 0.898195
Target:  5'- -aACCUUUUAACACCUAAaCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169982 0.74 0.996412
Target:  5'- -aACCCUU---UAUCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169543 0.68 0.999998
Target:  5'- gUUACagggUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGgga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169510 0.96 0.268144
Target:  5'- -aACUCUUUAACACCUGAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169441 0.96 0.254235
Target:  5'- -aACCCUUUAACACUUAAGCUGUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169122 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169121 0.82 0.867005
Target:  5'- uUUAUUCUUUAACAUUUAAGCUAUAUAg -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 167431 0.74 0.994962
Target:  5'- uUUACCuUUUUAACuCCUAAGUUAUAUAa -3'
miRNA:   3'- -AAUGG-GAAAUUGuGGAUUCGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.