miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 184860 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUGUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 184748 0.83 0.822165
Target:  5'- -aAUCCU--AACACCUGAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAaaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 184586 0.84 0.771952
Target:  5'- cUUAUgCUUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGgGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 184372 0.7 0.999905
Target:  5'- -aACCUUUUAACACCc--GUUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGauuCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 182934 0.79 0.951329
Target:  5'- ----aUUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aauggGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 182555 0.85 0.728905
Target:  5'- gUACCaCUcgauuUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGG-GA-----AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 181388 0.67 0.999999
Target:  5'- -cACUgCUUUAAUcCCUAAGUUAUAUAa -3'
miRNA:   3'- aaUGG-GAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 181225 0.75 0.991928
Target:  5'- -cAgCCUUUAACuCCUAAGUUAUAUAc -3'
miRNA:   3'- aaUgGGAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 180955 0.67 0.999999
Target:  5'- aUACCCUUUAAC-CCau-GCUGUu-- -3'
miRNA:   3'- aAUGGGAAAUUGuGGauuCGAUAuau -5'
28254 3' -43.1 NC_005902.1 + 180882 0.82 0.849799
Target:  5'- -aACCCUUUAACAUCUAAGCaAUAUc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGaUAUAu -5'
28254 3' -43.1 NC_005902.1 + 180825 0.72 0.999269
Target:  5'- cUACCU---AACACCUAAGCgAUAUAc -3'
miRNA:   3'- aAUGGGaaaUUGUGGAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 180619 0.81 0.898195
Target:  5'- -aAUUCUUUAACACCUAAGCuUAUAUGa -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 180349 0.79 0.951329
Target:  5'- -aAUUCUUUAACcCCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 179809 0.87 0.638602
Target:  5'- -aACCCUUUAACAaCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUgGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 179692 0.86 0.695477
Target:  5'- uUUAUCCUUUAAaACCUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUgUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 178410 0.7 0.999947
Target:  5'- -aACCUUUUAAUACUUAAaCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 178365 0.7 0.999947
Target:  5'- uUUACUCU-----ACCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAaauugUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 177588 0.71 0.999639
Target:  5'- -aACCUUUUAACACCUAAaCUAUu-- -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAuau -5'
28254 3' -43.1 NC_005902.1 + 177323 0.83 0.822165
Target:  5'- cUAUCCUUUAACACCUAAGUuuauuUGUAUAu -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCG-----AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 175937 0.72 0.99954
Target:  5'- -aACCCUUUAACuCCUAAGgUAUc-- -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUUCgAUAuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.