miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 169441 0.96 0.254235
Target:  5'- -aACCCUUUAACACUUAAGCUGUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 85339 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 54048 1 0.16805
Target:  5'- aUAUCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 97174 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 48107 0.93 0.346916
Target:  5'- cUUACCCUUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 170699 0.95 0.275325
Target:  5'- -aACUCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 30796 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 50209 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 16873 0.96 0.268144
Target:  5'- cUUAUCCUUUAACACCUAAGCUAUAUc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 23255 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 61619 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 105941 0.96 0.261114
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 48378 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUGUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 45075 0.99 0.177815
Target:  5'- uUUACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 99555 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 13181 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 114808 0.93 0.355647
Target:  5'- uUUACCCUUUAACACUUAGGUUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1144 0.93 0.355647
Target:  5'- -aACCCUUUAAgACCUAAGCUGUAUAc -3'
miRNA:   3'- aaUGGGAAAUUgUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 166125 0.95 0.297791
Target:  5'- aUACCCUUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 39095 0.95 0.28266
Target:  5'- -aACUCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.