miRNA display CGI


Results 41 - 60 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 90591 0.68 0.999997
Target:  5'- -aGCCUUaggauuuaaagggUUAACACCUAAGCUugcugauuguucauAUAUAa -3'
miRNA:   3'- aaUGGGA-------------AAUUGUGGAUUCGA--------------UAUAU- -5'
28254 3' -43.1 NC_005902.1 + 143480 0.68 0.999997
Target:  5'- uUUACCCUUUAAauCCUAAGgCuUAUAUGa -3'
miRNA:   3'- -AAUGGGAAAUUguGGAUUC-G-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 38407 0.68 0.999997
Target:  5'- aUUACa--UUAACAUCUAAGCUAUAc- -3'
miRNA:   3'- -AAUGggaAAUUGUGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 110869 0.68 0.999997
Target:  5'- -aACUCUU---UACCUAAGUUAUAUAg -3'
miRNA:   3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 127633 0.68 0.999995
Target:  5'- -aACCCUU---UAUUUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 27883 0.68 0.999995
Target:  5'- ------gUUAAUGCCUAAGCUAUAUAu -3'
miRNA:   3'- aaugggaAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 67357 0.68 0.999993
Target:  5'- gUACCUUUUAACAaCUAAGUUAgAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUgGAUUCGAUaUAU- -5'
28254 3' -43.1 NC_005902.1 + 87183 0.68 0.999993
Target:  5'- -aACCUUUUAACACUUAuGC-AUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUuCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 153031 0.68 0.999993
Target:  5'- -aACUUUUaAACAUUUAAGCUAUGUAc -3'
miRNA:   3'- aaUGGGAAaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 162719 0.69 0.99999
Target:  5'- uUUACCUU---AUACCUAAGCUAcAUAu -3'
miRNA:   3'- -AAUGGGAaauUGUGGAUUCGAUaUAU- -5'
28254 3' -43.1 NC_005902.1 + 46252 0.69 0.99999
Target:  5'- uUUACCCUUUAAauCCUAAGgCuUAUAUAa -3'
miRNA:   3'- -AAUGGGAAAUUguGGAUUC-G-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 29567 0.69 0.99999
Target:  5'- -aACUUUUUAAUAUCcAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGaUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 36900 0.69 0.99999
Target:  5'- -aGCCUUUUAACuCCUAAGgCUaGUAUAg -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUUC-GA-UAUAU- -5'
28254 3' -43.1 NC_005902.1 + 73849 0.69 0.999986
Target:  5'- -aACCUUUUAACACaUAAGC-AUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGgAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1203 0.69 0.99998
Target:  5'- ------gUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaugggaAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 148239 0.69 0.99998
Target:  5'- -aAUCUUUUAACAUUUAAGCuUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 109211 0.69 0.99998
Target:  5'- aUACCCaauuUUUAAaggauUAUCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGG----AAAUU-----GUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 158076 0.69 0.99998
Target:  5'- -aACCCUUUAAUACCUAcAGUgugaacaaGUGUAa -3'
miRNA:   3'- aaUGGGAAAUUGUGGAU-UCGa-------UAUAU- -5'
28254 3' -43.1 NC_005902.1 + 58530 0.69 0.99998
Target:  5'- gUAUUgCUUUAACACUgAAGCUAUAUAc -3'
miRNA:   3'- aAUGG-GAAAUUGUGGaUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 141932 0.69 0.999972
Target:  5'- -aACUCUUUAACAgCUAAaCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUgGAUUcGAUAUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.