miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 165979 0.9 0.555148
Target:  5'- uGUAUAUGGCUUAuGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 143803 0.9 0.555148
Target:  5'- uGUAUAUAGCUUAGGUGUUAAGaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 71498 0.9 0.566087
Target:  5'- -uUAUAUAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 87103 0.89 0.57708
Target:  5'- -uUAUAUAGCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 105307 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 146944 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 65798 0.89 0.599198
Target:  5'- --cAUAUAGCUcAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAaUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 169167 0.88 0.621431
Target:  5'- --gAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 3478 0.88 0.654826
Target:  5'- uGUAUAUAGCUUAGGUGUUAaaaucGAGuGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAU-----UUC-CCA- -5'
28254 5' -43.2 NC_005902.1 + 162576 0.87 0.665929
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- cCAUAUAUCgAAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 178441 0.87 0.676999
Target:  5'- aGUAUAUAaUUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 48290 0.87 0.698999
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 169577 0.87 0.698999
Target:  5'- aGUGUAUAGUUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 76684 0.87 0.698999
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 72257 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGuUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 143064 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 109956 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 96037 0.87 0.709904
Target:  5'- -aUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 76246 0.87 0.709904
Target:  5'- -aUAUAUAaCUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 39612 0.86 0.752626
Target:  5'- aGUGaauUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAU---AUAUCGAAUCCACAAUUUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.