miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 142022 1.06 0.29003
Target:  5'- uGCGUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 39306 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 80766 0.92 0.849806
Target:  5'- uGCAgugaguggGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUa-------UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 61654 0.66 1
Target:  5'- -----aGUAUAGCUUAGaUGUUAAa- -3'
miRNA:   3'- cguauaUAUAUCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 85932 0.97 0.611003
Target:  5'- aCAUAUAUAauaUAGCUUAGGUGUUAAUCc -3'
miRNA:   3'- cGUAUAUAU---AUCGAAUCCACAAUUAG- -5'
28256 5' -38.2 NC_005902.1 + 1175 0.97 0.645958
Target:  5'- aGCAUAUAUAcAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUaUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 34754 0.95 0.71514
Target:  5'- -aAUAUAUAUAGCUUAGGUGUUAAg- -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 50225 0.95 0.737607
Target:  5'- aGC-UAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 16905 0.92 0.840657
Target:  5'- aGCAUAucaaacaaaUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAU---------AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 170610 0.92 0.840657
Target:  5'- uGCuuauuUAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 28805 0.92 0.840657
Target:  5'- uGCucuuuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 104196 0.93 0.811781
Target:  5'- aGCAUuuguuUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAu----AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 74808 1 0.519424
Target:  5'- aGUGUAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 29603 0.92 0.840657
Target:  5'- uGCuuguuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 54373 0.99 0.541919
Target:  5'- uGUGUAUGUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 3470 0.93 0.801716
Target:  5'- uGCucauuUGUAUAUAGCUUAGGUGUUAaaAUCg -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAU--UAG- -5'
28256 5' -38.2 NC_005902.1 + 99643 0.92 0.840657
Target:  5'- uGCucacuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 52366 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 20322 0.98 0.564729
Target:  5'- -uGUAUAUAUAGCUUAGGUGUUAAUa -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCACAAUUAg -5'
28256 5' -38.2 NC_005902.1 + 162432 0.96 0.692305
Target:  5'- -uGUGUGUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCACAAUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.