miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 1175 0.97 0.645958
Target:  5'- aGCAUAUAUAcAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUaUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 1229 0.67 1
Target:  5'- aGCAUGUAUAUGuuUUAaGUGUUGAa- -3'
miRNA:   3'- -CGUAUAUAUAUcgAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 1291 0.85 0.986714
Target:  5'- -aGUAUAUAUAGCUcAGGUGUUAGg- -3'
miRNA:   3'- cgUAUAUAUAUCGAaUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 1439 0.75 0.999999
Target:  5'- aGCAUagcaagugaGUAUAUAGCUUAaGUGUUAAa- -3'
miRNA:   3'- -CGUA---------UAUAUAUCGAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 3108 0.89 0.931874
Target:  5'- ---cAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 3415 0.71 1
Target:  5'- ---cAUAUAUAGCUUAaGUGUUAAc- -3'
miRNA:   3'- cguaUAUAUAUCGAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 3470 0.93 0.801716
Target:  5'- uGCucauuUGUAUAUAGCUUAGGUGUUAaaAUCg -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAU--UAG- -5'
28256 5' -38.2 NC_005902.1 + 4811 0.67 1
Target:  5'- aGCAaGUAUAUAaCUUAGGaGUUAAa- -3'
miRNA:   3'- -CGUaUAUAUAUcGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 5216 0.77 0.999986
Target:  5'- ---aGUAUAUcGCUUAGGUGUUAGg- -3'
miRNA:   3'- cguaUAUAUAuCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 5421 0.89 0.931874
Target:  5'- ---cAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 5690 0.79 0.999776
Target:  5'- --uUGUAUAUAGCUUAGGgGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 6230 0.72 1
Target:  5'- ---aGUAUAUAGCUUAGuUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 6343 0.8 0.999521
Target:  5'- -aGUAUAUAUAGCUUAGGUuUUAAa- -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCAcAAUUag -5'
28256 5' -38.2 NC_005902.1 + 6565 0.74 1
Target:  5'- aGUAUAUAUAaaUAaCUUAGGUGUUAAc- -3'
miRNA:   3'- -CGUAUAUAU--AUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 7674 0.76 0.999997
Target:  5'- uGCuUGUAUAUAGCUUAGGUa------ -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUCCAcaauuag -5'
28256 5' -38.2 NC_005902.1 + 8205 0.77 0.99998
Target:  5'- uGCucacuUGUAUAUAGCUUAGGcaaaGUUAAUUc -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCa---CAAUUAG- -5'
28256 5' -38.2 NC_005902.1 + 8444 0.75 1
Target:  5'- -aGUAUAUcaaauaAUAGUUUAGGUGUUAAa- -3'
miRNA:   3'- cgUAUAUA------UAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 11070 0.74 1
Target:  5'- --uUGUAUAUAGCUUAaGUGUUAGa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 11449 0.9 0.89153
Target:  5'- ---cGUAUAUAGCUUAGGUGUUAAcUCg -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUU-AG- -5'
28256 5' -38.2 NC_005902.1 + 11574 0.67 1
Target:  5'- aGUAaGUAUAUAGCUUAGaUGUa---- -3'
miRNA:   3'- -CGUaUAUAUAUCGAAUCcACAauuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.