miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 184833 0.74 1
Target:  5'- uGCuuauuUGUAUAUAaCUUAGGUGUUAAc- -3'
miRNA:   3'- -CGu----AUAUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 184778 0.81 0.99881
Target:  5'- --uUAUAUAUAGCcUAGGUGUUGAa- -3'
miRNA:   3'- cguAUAUAUAUCGaAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 184631 0.77 0.99998
Target:  5'- ---cGUAUAUAGCUUAGGgGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 183020 0.75 0.999999
Target:  5'- ---aGUAUAUAGCUUAGaUGUUAAUa -3'
miRNA:   3'- cguaUAUAUAUCGAAUCcACAAUUAg -5'
28256 5' -38.2 NC_005902.1 + 182962 1 0.486406
Target:  5'- aGUGUAUAUAUAGCUUAGGUGUUaAAUCg -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCCACAA-UUAG- -5'
28256 5' -38.2 NC_005902.1 + 182662 0.87 0.961183
Target:  5'- -uGUAUGUAUAGCUUAGGUGUa---- -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCACAauuag -5'
28256 5' -38.2 NC_005902.1 + 181261 0.69 1
Target:  5'- uGCuuauuUGUAUAUAGCgUAGG-GUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGaAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 180923 0.68 1
Target:  5'- aGCAaAUAUAUuGCUUAGaUGUUAAa- -3'
miRNA:   3'- -CGUaUAUAUAuCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 180653 0.75 0.999999
Target:  5'- uGUGUAUAUAUAGUUUAGuUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 179786 0.86 0.974976
Target:  5'- aGUGUAUAUAUGGCUUcGGUGUUAAc- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAuCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 179726 0.75 0.999999
Target:  5'- --uUGUAUAUGGCUUAGGUcUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCAcAAUUag -5'
28256 5' -38.2 NC_005902.1 + 178441 0.67 1
Target:  5'- ---aGUAUAUAaUUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 177857 0.66 1
Target:  5'- aGCAUaguaaacaaGUAUAUAGCUUAaaUGUUAGg- -3'
miRNA:   3'- -CGUA---------UAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 177626 0.77 0.999986
Target:  5'- --uUGUAUAUAGUUUAGGUGUa---- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAauuag -5'
28256 5' -38.2 NC_005902.1 + 173213 0.67 1
Target:  5'- aUAUAUAUAUAaCUUAGGaGUUAAa- -3'
miRNA:   3'- cGUAUAUAUAUcGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 172850 0.93 0.801716
Target:  5'- cGCAaauggGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUa----UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 170878 0.67 1
Target:  5'- aGCAUaacaaguaaGUAUAUAGCUUAcaUGUUAAa- -3'
miRNA:   3'- -CGUA---------UAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 170732 0.71 1
Target:  5'- uGCAUAUAUAauuc--AGGUGUUAAUCc -3'
miRNA:   3'- -CGUAUAUAUaucgaaUCCACAAUUAG- -5'
28256 5' -38.2 NC_005902.1 + 170610 0.92 0.840657
Target:  5'- uGCuuauuUAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 169573 0.89 0.931874
Target:  5'- uGCGaGUGUAUAGUUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUaUAUAUAUCGAAUCCACAAUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.