Results 1 - 20 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 131698 | 1.16 | 0.097648 |
Target: 5'- aGCAUAUAUAUAGCUUAGGUGUUAAUCc -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 142022 | 1.06 | 0.29003 |
Target: 5'- uGCGUGUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 182962 | 1 | 0.486406 |
Target: 5'- aGUGUAUAUAUAGCUUAGGUGUUaAAUCg -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAA-UUAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 138801 | 1 | 0.519424 |
Target: 5'- aGUGUGUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 74808 | 1 | 0.519424 |
Target: 5'- aGUGUAUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 54373 | 0.99 | 0.541919 |
Target: 5'- uGUGUAUGUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 20322 | 0.98 | 0.564729 |
Target: 5'- -uGUAUAUAUAGCUUAGGUGUUAAUa -3' miRNA: 3'- cgUAUAUAUAUCGAAUCCACAAUUAg -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 85932 | 0.97 | 0.611003 |
Target: 5'- aCAUAUAUAauaUAGCUUAGGUGUUAAUCc -3' miRNA: 3'- cGUAUAUAU---AUCGAAUCCACAAUUAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 100012 | 0.97 | 0.611003 |
Target: 5'- aCAUAUAUAauaUAGCUUAGGUGUUAAUCc -3' miRNA: 3'- cGUAUAUAU---AUCGAAUCCACAAUUAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 1175 | 0.97 | 0.645958 |
Target: 5'- aGCAUAUAUAcAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUaUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 28187 | 0.97 | 0.645958 |
Target: 5'- aGCAaAUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUaUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 162432 | 0.96 | 0.692305 |
Target: 5'- -uGUGUGUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- cgUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 48265 | 0.96 | 0.692305 |
Target: 5'- -uGUAUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- cgUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 34754 | 0.95 | 0.71514 |
Target: 5'- -aAUAUAUAUAGCUUAGGUGUUAAg- -3' miRNA: 3'- cgUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 135827 | 0.95 | 0.737607 |
Target: 5'- aGC-UAUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGuAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 50225 | 0.95 | 0.737607 |
Target: 5'- aGC-UAUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGuAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 135926 | 0.93 | 0.791453 |
Target: 5'- aGUAaGUAUGUAGCUUAGGUGUUagGAUCa -3' miRNA: 3'- -CGUaUAUAUAUCGAAUCCACAA--UUAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 15505 | 0.93 | 0.791453 |
Target: 5'- aGUGUAUAUAUAGUUUAGGUGUUAAa- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 3470 | 0.93 | 0.801716 |
Target: 5'- uGCucauuUGUAUAUAGCUUAGGUGUUAaaAUCg -3' miRNA: 3'- -CGu----AUAUAUAUCGAAUCCACAAU--UAG- -5' |
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28256 | 5' | -38.2 | NC_005902.1 | + | 172850 | 0.93 | 0.801716 |
Target: 5'- cGCAaauggGUAUAUAGCUUAGGUGUUAAa- -3' miRNA: 3'- -CGUa----UAUAUAUCGAAUCCACAAUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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