miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 80088 0.93 0.811781
Target:  5'- uGCAUuuauuuGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUA------UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 105297 0.93 0.811781
Target:  5'- uGCAUuuguuuGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUA------UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 104196 0.93 0.811781
Target:  5'- aGCAUuuguuUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAu----AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 140949 0.92 0.831263
Target:  5'- aGCAUagcaaguaaGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUA---------UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 29480 0.92 0.840657
Target:  5'- aGCAUAgugaguaaaUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAU---------AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 29603 0.92 0.840657
Target:  5'- uGCuuguuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 28805 0.92 0.840657
Target:  5'- uGCucuuuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 16905 0.92 0.840657
Target:  5'- aGCAUAucaaacaaaUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAU---------AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 99643 0.92 0.840657
Target:  5'- uGCucacuUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 170610 0.92 0.840657
Target:  5'- uGCuuauuUAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 80766 0.92 0.849806
Target:  5'- uGCAgugaguggGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUa-------UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 157061 0.92 0.849806
Target:  5'- cGUuUGUGUAUAGCUUAGGUGUUAAc- -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 69409 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 94182 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 143802 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAg- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 146943 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 52366 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 39306 0.92 0.849806
Target:  5'- --uUGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 125574 0.92 0.849806
Target:  5'- --uUAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 71680 0.91 0.867326
Target:  5'- uGCuuauuUGUAUAUAGCUUAGGUGUUAGa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCCACAAUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.