miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 37285 0.67 1
Target:  5'- cCGUucAUAUAGCUUAaGUGUUAAa- -3'
miRNA:   3'- cGUAuaUAUAUCGAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 100425 0.67 1
Target:  5'- ---aGUAUAUAGCUUaAGG-GUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAA-UCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 51453 0.67 1
Target:  5'- uGCAcuuguuUGUAUAUAGCUUAaaUGUUAAa- -3'
miRNA:   3'- -CGU------AUAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 91332 0.67 1
Target:  5'- cGCAcucauuUGUAcAUAGCUUAGGUaUUAAg- -3'
miRNA:   3'- -CGU------AUAUaUAUCGAAUCCAcAAUUag -5'
28256 5' -38.2 NC_005902.1 + 170878 0.67 1
Target:  5'- aGCAUaacaaguaaGUAUAUAGCUUAcaUGUUAAa- -3'
miRNA:   3'- -CGUA---------UAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 40703 0.67 1
Target:  5'- aGUGUGUAUAUAGCUUAGa-------- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCcacaauuag -5'
28256 5' -38.2 NC_005902.1 + 156763 0.67 1
Target:  5'- cGUuUGUAUAUGGCUUAGauuUUAAUCc -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUCcacAAUUAG- -5'
28256 5' -38.2 NC_005902.1 + 11574 0.67 1
Target:  5'- aGUAaGUAUAUAGCUUAGaUGUa---- -3'
miRNA:   3'- -CGUaUAUAUAUCGAAUCcACAauuag -5'
28256 5' -38.2 NC_005902.1 + 127508 0.67 1
Target:  5'- ---aGUAUAUAGCUUcaGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAucCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 4811 0.67 1
Target:  5'- aGCAaGUAUAUAaCUUAGGaGUUAAa- -3'
miRNA:   3'- -CGUaUAUAUAUcGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 178441 0.67 1
Target:  5'- ---aGUAUAUAaUUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 38284 0.67 1
Target:  5'- -gAUGUGguUAUAGCUUAGaUGUUAAa- -3'
miRNA:   3'- cgUAUAU--AUAUCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 15188 0.67 1
Target:  5'- aGUuUGUAUAUAGCUUAcaUGUUAAa- -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 100978 0.67 1
Target:  5'- aGCAUguaaGUAUAUAGCcUAGaUGUUAAa- -3'
miRNA:   3'- -CGUA----UAUAUAUCGaAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 173213 0.67 1
Target:  5'- aUAUAUAUAUAaCUUAGGaGUUAAa- -3'
miRNA:   3'- cGUAUAUAUAUcGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 58263 0.67 1
Target:  5'- ---aGUAUAUAGCUUcaGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAucCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 139102 0.68 1
Target:  5'- uGCuUGcAUAUAGCUUAGGUaUUAAc- -3'
miRNA:   3'- -CGuAUaUAUAUCGAAUCCAcAAUUag -5'
28256 5' -38.2 NC_005902.1 + 73969 0.68 1
Target:  5'- --uUAUAUAUGaUUUAGGUGUUAAa- -3'
miRNA:   3'- cguAUAUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 156583 0.68 1
Target:  5'- uGCuuguuUAUAUAUAaUUUGGGUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 144183 0.68 1
Target:  5'- uGCuuacuUGUAUAUAGUUUAGaUGUUAAa- -3'
miRNA:   3'- -CGu----AUAUAUAUCGAAUCcACAAUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.