miRNA display CGI


Results 21 - 40 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 5' -38.2 NC_005902.1 + 12860 0.69 1
Target:  5'- aCGUGUAUAUAaCUUAGGaGUUAAg- -3'
miRNA:   3'- cGUAUAUAUAUcGAAUCCaCAAUUag -5'
28256 5' -38.2 NC_005902.1 + 13225 0.89 0.931874
Target:  5'- ---cAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 13433 0.73 1
Target:  5'- aCAaGUAUAUAGCUUAaGUGUUAAa- -3'
miRNA:   3'- cGUaUAUAUAUCGAAUcCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 15188 0.67 1
Target:  5'- aGUuUGUAUAUAGCUUAcaUGUUAAa- -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUccACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 15340 0.89 0.931874
Target:  5'- ---cAUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 15453 0.66 1
Target:  5'- aGCAUAUAUA-GGUc-AGGUGUUAc-- -3'
miRNA:   3'- -CGUAUAUAUaUCGaaUCCACAAUuag -5'
28256 5' -38.2 NC_005902.1 + 15505 0.93 0.791453
Target:  5'- aGUGUAUAUAUAGUUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 16490 0.68 1
Target:  5'- cGCAUGUAUAUAGCUUAa--------- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUccacaauuag -5'
28256 5' -38.2 NC_005902.1 + 16530 0.79 0.999871
Target:  5'- ---gAUAUAUAGCUcAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAaUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 16905 0.92 0.840657
Target:  5'- aGCAUAucaaacaaaUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAU---------AUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 18779 0.75 1
Target:  5'- aGCAUAguaaacgaaUAUAUAaCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGUAU---------AUAUAUcGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 18880 0.9 0.906202
Target:  5'- cGCuuaaGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- -CGua--UAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 19910 0.75 1
Target:  5'- aGCAUGUAUAUAGCUUAaGUaUUAAa- -3'
miRNA:   3'- -CGUAUAUAUAUCGAAUcCAcAAUUag -5'
28256 5' -38.2 NC_005902.1 + 20091 0.75 0.999999
Target:  5'- aGUGUAUAUAUAGCUUaaguauuaaaAGGUGUUu--- -3'
miRNA:   3'- -CGUAUAUAUAUCGAA----------UCCACAAuuag -5'
28256 5' -38.2 NC_005902.1 + 20153 0.9 0.913083
Target:  5'- ---cGUAUAUAGCUUAGGUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 20322 0.98 0.564729
Target:  5'- -uGUAUAUAUAGCUUAGGUGUUAAUa -3'
miRNA:   3'- cgUAUAUAUAUCGAAUCCACAAUUAg -5'
28256 5' -38.2 NC_005902.1 + 22529 0.76 0.999993
Target:  5'- cGCuUGUuUAUAGCUUAGaUGUUAAUCc -3'
miRNA:   3'- -CGuAUAuAUAUCGAAUCcACAAUUAG- -5'
28256 5' -38.2 NC_005902.1 + 22654 0.71 1
Target:  5'- ---cAUAUAUAGCUUAGaUGUUAAa- -3'
miRNA:   3'- cguaUAUAUAUCGAAUCcACAAUUag -5'
28256 5' -38.2 NC_005902.1 + 23321 0.69 1
Target:  5'- ---aAUAUGUAGCUUAGGUa------ -3'
miRNA:   3'- cguaUAUAUAUCGAAUCCAcaauuag -5'
28256 5' -38.2 NC_005902.1 + 23439 0.67 1
Target:  5'- uGUuUGUAUAUAGCUUGaauGUGUUAGc- -3'
miRNA:   3'- -CGuAUAUAUAUCGAAUc--CACAAUUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.