Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 90125 | 0.79 | 0.747018 |
Target: 5'- uACCCUUUAAUUCUAUauCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 180956 | 0.79 | 0.705084 |
Target: 5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3' miRNA: 3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169665 | 0.79 | 0.747018 |
Target: 5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 16803 | 0.78 | 0.791013 |
Target: 5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 23356 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 90488 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 36022 | 0.78 | 0.7842 |
Target: 5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3' miRNA: 3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 104142 | 0.78 | 0.767345 |
Target: 5'- cACCUUUUAACUCCAUGuUGUUAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169194 | 0.78 | 0.787129 |
Target: 5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 174577 | 0.77 | 0.806283 |
Target: 5'- uACCuUUUUAACUCCAgGCGUUAUCAAc -3' miRNA: 3'- -UGG-GAAAUUGAGGUaCGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 160818 | 0.77 | 0.833651 |
Target: 5'- uACCUUUUAACUCaagGCGUUGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 10059 | 0.77 | 0.833651 |
Target: 5'- aACCCUUUAACUCUgcGCuGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGuaCG-CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 81854 | 0.77 | 0.833651 |
Target: 5'- aACUCUUUAACUCCuaagGCGUUAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 136636 | 0.77 | 0.833651 |
Target: 5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 175937 | 0.77 | 0.824723 |
Target: 5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 165878 | 0.77 | 0.806283 |
Target: 5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 114319 | 0.76 | 0.875016 |
Target: 5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 134640 | 0.76 | 0.842372 |
Target: 5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 4897 | 0.76 | 0.862405 |
Target: 5'- aACCCUUUAACUCUcaaagcauuacagugAUauaaaGCGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGG---------------UA-----CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 94950 | 0.76 | 0.859158 |
Target: 5'- uACCCUUUAACUCCAcaCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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