miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 36164 0.7 0.988748
Target:  5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 103831 0.7 0.988748
Target:  5'- aACCCUUUAACUUUcaaaGUGUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 170069 0.67 0.998628
Target:  5'- uAUCCUUUAACUCCA--CaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 92530 0.67 0.998874
Target:  5'- aACCCccUGACUCCuaaaGUGUCAUUGAc -3'
miRNA:   3'- -UGGGaaAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 116843 0.67 0.999082
Target:  5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 72467 0.67 0.999256
Target:  5'- uAUCCUUUGAUUCCAUGuUGUUAaUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 4541 0.66 0.999619
Target:  5'- uACCCUUUAACUUCuaaaGCaUUGUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127399 0.66 0.999699
Target:  5'- aACUCUUUAACUCUuaaGaCGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 15221 0.66 0.999764
Target:  5'- uACCUUUUAACUC---GUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 88763 0.66 0.999816
Target:  5'- aACCCUUUAAUUCUAUauUGUCAaCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 118574 0.67 0.998628
Target:  5'- aACCCUUUAACUUCuaagGCaUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 73719 0.67 0.998628
Target:  5'- uACCCUUUAACUCUAcacUGUUAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48403 0.7 0.988748
Target:  5'- aACCCUUUAACUCCuaaaGUaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24227 0.7 0.991441
Target:  5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 69241 0.7 0.992581
Target:  5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 1554 0.69 0.995293
Target:  5'- uACCCUUUAACUUCAcauCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 31346 0.68 0.997599
Target:  5'- -gCCUUUAACUCCAaaCaUCAUCAAUa -3'
miRNA:   3'- ugGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137492 0.68 0.998337
Target:  5'- uACUCUUUAACUCUAUaCaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcGcAGUAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.