miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 180993 0.72 0.997934
Target:  5'- -cAUUGAcAACGCUUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 174976 0.67 0.999995
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAu -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 174701 0.69 0.999869
Target:  5'- gUUAUUGAUGAUGUCUUaaGAGUUAAu -3'
miRNA:   3'- -AAUAACUAUUGCGGAAccCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 172697 0.69 0.999829
Target:  5'- gUGUUGucaAUGAUGCCUUaGGGGUUAAc -3'
miRNA:   3'- aAUAAC---UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 169238 0.67 0.999989
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 167524 0.69 0.999869
Target:  5'- -cAUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159836 0.67 0.999996
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159717 0.81 0.817111
Target:  5'- -cAUUGAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAACUAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 159609 0.66 0.999999
Target:  5'- -cAUUGAUAAUGCCUUagaaauuaaaGGGuuaaauGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAA----------CCCu-----CAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 158312 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 156500 0.74 0.989384
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 154692 0.69 0.999901
Target:  5'- gUUAUUGAUGAUGUUU--GGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 143745 0.77 0.94793
Target:  5'- -cAUUGAUAAUGCCUUGaguuaaGGGGUUAAGu -3'
miRNA:   3'- aaUAACUAUUGCGGAAC------CCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 142076 0.69 0.999901
Target:  5'- gUUAUUGAUGAUGCCUUcGaAGUUAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCcUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 139851 0.72 0.997509
Target:  5'- -cAUUGAUGACGCCaUGaguuaGGGGUUAAc -3'
miRNA:   3'- aaUAACUAUUGCGGaAC-----CCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 137997 0.66 0.999999
Target:  5'- ---cUGAcGAUGCCUUaGGAGUUAu- -3'
miRNA:   3'- aauaACUaUUGCGGAAcCCUCAAUuu -5'
28257 5' -44.3 NC_005902.1 + 136053 0.87 0.55607
Target:  5'- aUUAUUGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 131044 0.7 0.99941
Target:  5'- gUUAUUaAUGAUGCCUUaGGGGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 127710 1.04 0.0711
Target:  5'- gUUAUUGAUAACGCCUUGGGAGUUAAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 122868 0.73 0.994145
Target:  5'- aUUGUUGAUGAUGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.