miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 10097 0.73 0.993159
Target:  5'- aUUGUUGAUGAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11214 0.73 0.993159
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAGg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 61554 0.74 0.989384
Target:  5'- -cGUUGAcAAUGCCUuaggagUGGGGGUUAAGu -3'
miRNA:   3'- aaUAACUaUUGCGGA------ACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 156500 0.74 0.989384
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 58362 0.75 0.979708
Target:  5'- gUAUUGAUGACGCau--GGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGCGgaacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 37360 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAa -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 27640 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 158312 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 99696 0.77 0.94793
Target:  5'- aUUGUUGAUGACGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 143745 0.77 0.94793
Target:  5'- -cAUUGAUAAUGCCUUGaguuaaGGGGUUAAGu -3'
miRNA:   3'- aaUAACUAUUGCGGAAC------CCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 16371 0.78 0.926692
Target:  5'- -cAUUGAUGACGCCUUaaGAGUUAAAa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 71302 0.8 0.853579
Target:  5'- -----aAUGAUGCCUUGGGAGUUAGGg -3'
miRNA:   3'- aauaacUAUUGCGGAACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159717 0.81 0.817111
Target:  5'- -cAUUGAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAACUAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 11459 0.85 0.657354
Target:  5'- aUUGUUGAUAACGCCU--GGAGUUAAAa -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 96074 0.86 0.578362
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 90163 0.86 0.567188
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAGAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 136053 0.87 0.55607
Target:  5'- aUUAUUGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 127710 1.04 0.0711
Target:  5'- gUUAUUGAUAACGCCUUGGGAGUUAAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAACCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.