Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28258 | 5' | -41.1 | NC_005902.1 | + | 80091 | 0.78 | 0.994004 |
Target: 5'- aUUUAUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 15498 | 0.78 | 0.994909 |
Target: 5'- -aCAUgugagugUAUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaGUAa------GUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 52360 | 0.78 | 0.994004 |
Target: 5'- aUUUAUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 75848 | 0.78 | 0.994004 |
Target: 5'- -cCGUUUGUAUAUAGUUCAGGUaUUAa -3' miRNA: 3'- aaGUAAGUAUAUAUCAAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 71682 | 0.77 | 0.996386 |
Target: 5'- cUUAUUUGUAUAUAGcUUAGGUGUUAg -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 113817 | 0.77 | 0.995699 |
Target: 5'- -gUAUgUAUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaGUAaGUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 125569 | 0.77 | 0.996386 |
Target: 5'- cUUGUUUAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 94177 | 0.77 | 0.996386 |
Target: 5'- cUUAUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 162747 | 0.76 | 0.998876 |
Target: 5'- cUCAUUCAUAUAUAGcUUAGGUaUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 13219 | 0.76 | 0.998613 |
Target: 5'- cUUAcUCAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 32390 | 0.76 | 0.998613 |
Target: 5'- cUUGUUCGUAUAUAGUUUAaGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCAAGUcCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 105300 | 0.75 | 0.999095 |
Target: 5'- aUUUGUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 29605 | 0.75 | 0.999548 |
Target: 5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 146938 | 0.75 | 0.999548 |
Target: 5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 153066 | 0.75 | 0.999548 |
Target: 5'- ------aGUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaguaagUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 22648 | 0.75 | 0.999548 |
Target: 5'- aUCAUUCAUAUAUAGcUUAGaUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 39301 | 0.75 | 0.999548 |
Target: 5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 77177 | 0.74 | 0.999646 |
Target: 5'- cUUAUUUAUAUAUAaUUUAGGUGUUGa -3' miRNA: 3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 145969 | 0.74 | 0.999646 |
Target: 5'- cUCAUUCAUAUAUAGcUUAaGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 15454 | 0.74 | 0.999726 |
Target: 5'- -----gCAUAUAUAGgUCAGGUGUUAc -3' miRNA: 3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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