miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 29605 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 32390 0.76 0.998613
Target:  5'- cUUGUUCGUAUAUAGUUUAaGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 34755 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 38445 0.84 0.895492
Target:  5'- cUCAUUUAUAUAUAGcUUAGGUGUUAc -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 39301 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 45115 0.81 0.966607
Target:  5'- cUUGUUCGUAUAUAGcUUAGGUGUUAu -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 48259 0.7 0.999999
Target:  5'- cUUAUUUguAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAG--UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 48610 0.74 0.999789
Target:  5'- ------aAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 50227 0.66 1
Target:  5'- -----cUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 52360 0.78 0.994004
Target:  5'- aUUUAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 54077 0.74 0.999726
Target:  5'- -aCAg--AUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 54367 0.74 0.999839
Target:  5'- cUCAUUUguguAUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAG----UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 65785 0.66 1
Target:  5'- -aCAgcagCAUgagcAUAUAGcUCAGGUGUUAa -3'
miRNA:   3'- aaGUaa--GUA----UAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 67956 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUgGGGUu--- -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCAcaau -5'
28258 5' -41.1 NC_005902.1 + 69404 0.73 0.999878
Target:  5'- cUCAcUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 71682 0.77 0.996386
Target:  5'- cUUAUUUGUAUAUAGcUUAGGUGUUAg -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 73954 0.66 1
Target:  5'- aUUCAccacacuuuUUUAUAUAUGaUUUAGGUGUUAa -3'
miRNA:   3'- -AAGU---------AAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 74811 0.66 1
Target:  5'- -----gUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 75848 0.78 0.994004
Target:  5'- -cCGUUUGUAUAUAGUUCAGGUaUUAa -3'
miRNA:   3'- aaGUAAGUAUAUAUCAAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 77177 0.74 0.999646
Target:  5'- cUUAUUUAUAUAUAaUUUAGGUGUUGa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.