miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 151324 0.79 0.987375
Target:  5'- cUC-UUCAUAUAUAGUaUAGGUGUUAa -3'
miRNA:   3'- aAGuAAGUAUAUAUCAaGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 146938 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 146760 0.69 1
Target:  5'- -aCAagUAUAUAcaUGGUUUAGGUGUUAg -3'
miRNA:   3'- aaGUaaGUAUAU--AUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 145969 0.74 0.999646
Target:  5'- cUCAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 143797 0.82 0.940081
Target:  5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 142510 0.66 1
Target:  5'- cUCAUUUGUAUAUAGgUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 137469 0.73 0.999909
Target:  5'- gUUUAUUUGUGUAUAGUUUAGGUaUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 136278 0.73 0.999878
Target:  5'- -aCAa--AUAUAUAGUUUAGGUGUUGa -3'
miRNA:   3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 135924 0.67 1
Target:  5'- -aCAguaaGUAUGUAGcUUAGGUGUUAg -3'
miRNA:   3'- aaGUaag-UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 135829 0.66 1
Target:  5'- -----cUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131983 0.81 0.973221
Target:  5'- aUCuGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAG-UAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131701 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 125569 0.77 0.996386
Target:  5'- cUUGUUUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 124415 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 120282 1.06 0.12106
Target:  5'- gUUCAUUCAUAUAUAGUUCAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 118676 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUaGGG-GUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 117904 0.67 1
Target:  5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3'
miRNA:   3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 116672 0.68 1
Target:  5'- --------cAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaaguaUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 113817 0.77 0.995699
Target:  5'- -gUAUgUAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAaGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 107824 0.68 1
Target:  5'- cUUAUUCGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.