Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28258 | 5' | -41.1 | NC_005902.1 | + | 99645 | 0.73 | 0.999878 |
Target: 5'- cUCAcUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 48610 | 0.74 | 0.999789 |
Target: 5'- ------aAUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaguaagUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 75848 | 0.78 | 0.994004 |
Target: 5'- -cCGUUUGUAUAUAGUUCAGGUaUUAa -3' miRNA: 3'- aaGUAAGUAUAUAUCAAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 5415 | 0.82 | 0.940081 |
Target: 5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 116672 | 0.68 | 1 |
Target: 5'- --------cAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaguaaguaUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 162625 | 0.72 | 0.999991 |
Target: 5'- cUUGUUUGUAUAUAGcUUGGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 145969 | 0.74 | 0.999646 |
Target: 5'- cUCAUUCAUAUAUAGcUUAaGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 3472 | 0.82 | 0.940081 |
Target: 5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 1292 | 0.72 | 0.999991 |
Target: 5'- -----gUAUAUAUAGcUCAGGUGUUAg -3' miRNA: 3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 3102 | 0.82 | 0.940081 |
Target: 5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 54077 | 0.74 | 0.999726 |
Target: 5'- -aCAg--AUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 137469 | 0.73 | 0.999909 |
Target: 5'- gUUUAUUUGUGUAUAGUUUAGGUaUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCAAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 162747 | 0.76 | 0.998876 |
Target: 5'- cUCAUUCAUAUAUAGcUUAGGUaUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 113817 | 0.77 | 0.995699 |
Target: 5'- -gUAUgUAUAUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaGUAaGUAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 169570 | 0.8 | 0.983518 |
Target: 5'- -aCAUgcgaGUGUAUAGUUUAGGUGUUAa -3' miRNA: 3'- aaGUAag--UAUAUAUCAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 156822 | 0.82 | 0.940081 |
Target: 5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 16910 | 0.67 | 1 |
Target: 5'- aUCAaacaaAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUaag--UAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 107245 | 0.68 | 1 |
Target: 5'- aUUUGUUCAUAUAUAGUacaAGG-GUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCAag-UCCaCAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 26294 | 0.7 | 0.999999 |
Target: 5'- cUCAUUUAUAUAUAGcUUAGGUaUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 170729 | 0.71 | 0.999994 |
Target: 5'- --aAUUgCAUAUAUAaUUCAGGUGUUAa -3' miRNA: 3'- aagUAA-GUAUAUAUcAAGUCCACAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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