miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 50227 0.66 1
Target:  5'- -----cUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 48610 0.74 0.999789
Target:  5'- ------aAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 95431 0.66 1
Target:  5'- --aGUUCAUAUAcAGcUUAGGUGUUu -3'
miRNA:   3'- aagUAAGUAUAUaUCaAGUCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 54367 0.74 0.999839
Target:  5'- cUCAUUUguguAUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAG----UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 107245 0.68 1
Target:  5'- aUUUGUUCAUAUAUAGUacaAGG-GUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAag-UCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 104197 0.68 1
Target:  5'- -gCAUUUguuUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaGUAAGu--AUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5685 0.66 1
Target:  5'- cUUAUUUGUAUAUAGcUUAGGgGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 67956 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUgGGGUu--- -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCAcaau -5'
28258 5' -41.1 NC_005902.1 + 8449 0.66 1
Target:  5'- aUCAa--AUA-AUAGUUUAGGUGUUAa -3'
miRNA:   3'- aAGUaagUAUaUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131701 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 15498 0.78 0.994909
Target:  5'- -aCAUgugagugUAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAa------GUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 117904 0.67 1
Target:  5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3'
miRNA:   3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 94177 0.77 0.996386
Target:  5'- cUUAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 32390 0.76 0.998613
Target:  5'- cUUGUUCGUAUAUAGUUUAaGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 105300 0.75 0.999095
Target:  5'- aUUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 22648 0.75 0.999548
Target:  5'- aUCAUUCAUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 146938 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 153066 0.75 0.999548
Target:  5'- ------aGUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 107824 0.68 1
Target:  5'- cUUAUUCGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 84961 0.68 1
Target:  5'- gUUUGUUCAUAUAUAGUgUAGaUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAaGUCcACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.