miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 80091 0.78 0.994004
Target:  5'- aUUUAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 80773 0.66 1
Target:  5'- --aGUggGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aagUAagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 84961 0.68 1
Target:  5'- gUUUGUUCAUAUAUAGUgUAGaUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAaGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 88859 0.9 0.642544
Target:  5'- cUCAUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 90629 0.79 0.990495
Target:  5'- aUUGUUCAUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 94177 0.77 0.996386
Target:  5'- cUUAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 95431 0.66 1
Target:  5'- --aGUUCAUAUAcAGcUUAGGUGUUu -3'
miRNA:   3'- aagUAAGUAUAUaUCaAGUCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 97740 0.67 1
Target:  5'- aUUUAUUUGcAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUaUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 99645 0.73 0.999878
Target:  5'- cUCAcUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 104197 0.68 1
Target:  5'- -gCAUUUguuUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaGUAAGu--AUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 105300 0.75 0.999095
Target:  5'- aUUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 107245 0.68 1
Target:  5'- aUUUGUUCAUAUAUAGUacaAGG-GUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAag-UCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 107824 0.68 1
Target:  5'- cUUAUUCGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 113817 0.77 0.995699
Target:  5'- -gUAUgUAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAaGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 116672 0.68 1
Target:  5'- --------cAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaaguaUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 117904 0.67 1
Target:  5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3'
miRNA:   3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 118676 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUaGGG-GUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 120282 1.06 0.12106
Target:  5'- gUUCAUUCAUAUAUAGUUCAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 124415 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 125569 0.77 0.996386
Target:  5'- cUUGUUUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.