miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 184835 0.66 1
Target:  5'- cUUAUUUGUAUAUAacUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 184773 0.79 0.987375
Target:  5'- cUCAUUUAUAUAUAGccUAGGUGUUGa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaaGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 184626 0.66 1
Target:  5'- cUCA-UCGUAUAUAGcUUAGGgGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 182965 0.66 1
Target:  5'- -----gUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 179721 0.67 1
Target:  5'- cUCAUUUGUAUAUGGcUUAGGUcUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 177621 0.88 0.755613
Target:  5'- cUCAUUUGUAUAUAGUUUAGGUGUa- -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAGUCCACAau -5'
28258 5' -41.1 NC_005902.1 + 170729 0.71 0.999994
Target:  5'- --aAUUgCAUAUAUAaUUCAGGUGUUAa -3'
miRNA:   3'- aagUAA-GUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 170612 0.8 0.983518
Target:  5'- cUUAUUUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 169570 0.8 0.983518
Target:  5'- -aCAUgcgaGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAag--UAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 167179 0.71 0.999997
Target:  5'- cUUAagCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 164868 0.66 1
Target:  5'- -cUAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aaGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 163417 0.7 0.999999
Target:  5'- aUCGUgaguaaAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAag----UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162747 0.76 0.998876
Target:  5'- cUCAUUCAUAUAUAGcUUAGGUaUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 162625 0.72 0.999991
Target:  5'- cUUGUUUGUAUAUAGcUUGGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162425 0.72 0.999987
Target:  5'- aUUUAUUUguGUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAG--UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162055 0.67 1
Target:  5'- cUUGUUCAuUAUAUAGUUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGU-AUAUAUCAAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 157058 0.82 0.945235
Target:  5'- aUUCGUUUGUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 156822 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 156585 0.7 1
Target:  5'- cUUGUUUAUAUAUAaUUUGGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 153066 0.75 0.999548
Target:  5'- ------aGUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.