miRNA display CGI


Results 1 - 20 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 110000 0.66 1
Target:  5'- cCUUcAAUAUCUAAGCUAUAUuAUUUACu -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUA-UGGGUG- -5'
28261 3' -43 NC_005902.1 + 118435 0.68 1
Target:  5'- gCUUUcAACAUCUAAGCUAUAUAaaugaGCu -3'
miRNA:   3'- -GAAA-UUGUGGAUUCGAUAUAUggg--UG- -5'
28261 3' -43 NC_005902.1 + 148243 0.66 1
Target:  5'- uUUUAACAUUUAAGCuUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCG-AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 36098 0.67 1
Target:  5'- cCUUUAACACCUAAGgUGUGguugaUgACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCgAUAUaug--GgUG- -5'
28261 3' -43 NC_005902.1 + 81054 0.67 1
Target:  5'- uUUUAACAUCUAAGCUAUAcaauUAagCAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAU----AUggGUG- -5'
28261 3' -43 NC_005902.1 + 127717 0.67 1
Target:  5'- --aUAACGCCUuggGAGUUAaacUGUACUUACu -3'
miRNA:   3'- gaaAUUGUGGA---UUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49437 0.67 1
Target:  5'- uUUUAACACCUAAGUUAUAaauagggGCa-GCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUa------UGggUG- -5'
28261 3' -43 NC_005902.1 + 76783 0.67 1
Target:  5'- ----uACAUUUAGGCUAUAUACaaACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 15310 0.67 1
Target:  5'- -aUUAACACCUGAaUUAUAUAUgCAa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 49766 0.66 1
Target:  5'- ---cAACACCUAAaCUAuauauuuguuugcUAUACCUACu -3'
miRNA:   3'- gaaaUUGUGGAUUcGAU-------------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 100526 0.66 1
Target:  5'- uUUUGACACCUAAuCUAUAaACaaGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 4776 0.66 1
Target:  5'- uUUUAAC-CCUAcGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGuGGAUuCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 33374 0.66 1
Target:  5'- gUUUGGCACCaaucgcuUGAGCgcauacaAUGCCUACu -3'
miRNA:   3'- gAAAUUGUGG-------AUUCGaua----UAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 18583 0.66 1
Target:  5'- -gUUAACuCCUAAGUUAUAUACa--- -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 58402 0.66 1
Target:  5'- uUUUAACAUUUAuaCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUucGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 148620 0.66 1
Target:  5'- cCUUUAAUACCUAuaUUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUucGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 164701 0.66 1
Target:  5'- aUUUAAUGCCUAAGCUAUAa------ -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUaugggug -5'
28261 3' -43 NC_005902.1 + 1629 0.66 1
Target:  5'- -gUUAAUAUCUAAGUaAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 183499 0.66 1
Target:  5'- ----uGCAUCcAAGCUAgauUACCUACa -3'
miRNA:   3'- gaaauUGUGGaUUCGAUau-AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 108930 0.66 1
Target:  5'- aUUUAACACCUAAauuuaCUAUu--CCUACa -3'
miRNA:   3'- gAAAUUGUGGAUUc----GAUAuauGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.