miRNA display CGI


Results 81 - 100 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 90006 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGUUAUAUAUgCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 81838 0.87 0.69853
Target:  5'- cCUUUAACACCUAAGCUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 63238 0.87 0.676335
Target:  5'- cCUUUAACcCCUAAGCUAUAUACUCGg -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 179812 0.86 0.752632
Target:  5'- cCUUUAACAaCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 21312 0.86 0.73129
Target:  5'- uUUUAACAUCUAAGCUAUAUACUCu- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 105945 0.86 0.720457
Target:  5'- uUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 149800 0.86 0.752632
Target:  5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5'
28261 3' -43 NC_005902.1 + 172607 0.86 0.73129
Target:  5'- cCUUUAACACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 50212 0.86 0.709533
Target:  5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 15425 0.86 0.752632
Target:  5'- uCUUUAACACCUAAGCUAUAUAUaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 11408 0.86 0.752632
Target:  5'- uCUUUAACACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 98817 0.86 0.709533
Target:  5'- uUUUAACACUUAuGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUuCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 118651 0.86 0.709533
Target:  5'- uUUUAACACUUAAGCUAUAUACaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 182566 0.86 0.720457
Target:  5'- uUUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 184863 0.86 0.720457
Target:  5'- cCUUUAACACCUAAGCUGUAUAUaUGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 122523 0.86 0.73129
Target:  5'- gUUUAACcUCUAGGUUAUAUACCCACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 93841 0.86 0.720457
Target:  5'- aUUUAAUACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 114546 0.86 0.73129
Target:  5'- cCUUUAACACCUAGGCUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 135814 0.86 0.73129
Target:  5'- uCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 182935 0.86 0.73129
Target:  5'- uUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.