miRNA display CGI


Results 81 - 100 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 148754 0.78 0.975556
Target:  5'- cCUUUAACACUUAAGCUAUAUGaaCGg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 148620 0.66 1
Target:  5'- cCUUUAAUACCUAuaUUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUucGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 148243 0.66 1
Target:  5'- uUUUAACAUUUAAGCuUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCG-AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 147754 0.85 0.773464
Target:  5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 147595 0.79 0.958658
Target:  5'- --gUAACACCUAAGCUAUAUAUaaaugagCGCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 146735 0.94 0.381049
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 146595 0.84 0.803541
Target:  5'- --cUAACAUCUAAGCUAUAUACUUGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 146428 0.92 0.457994
Target:  5'- cCUUUAACACCUAAGCUAuaauucacUAUGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145947 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145342 0.69 0.999993
Target:  5'- -----uUAUCUAAGCUAUAUACaCACu -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 145047 0.8 0.944873
Target:  5'- uCUUUAGCACCUAAGCUAUAUgugaguguauauaGCUUAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUg -5'
28261 3' -43 NC_005902.1 + 144986 0.73 0.999301
Target:  5'- cCUUUAAUACUaAAGCUAUAUACaugauCACu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGAUAUAUGg----GUG- -5'
28261 3' -43 NC_005902.1 + 144150 0.8 0.9545
Target:  5'- uCUUUAAUACCUAAuCUAUAUAUUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 143775 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 143645 0.9 0.542492
Target:  5'- -aUUGACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 143020 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 142274 0.78 0.97267
Target:  5'- ---aAACACCUAuGCUAUAUACUUGCu -3'
miRNA:   3'- gaaaUUGUGGAUuCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 142156 0.96 0.313228
Target:  5'- uCUUUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 141996 0.79 0.962546
Target:  5'- uCUUUAACAUUUAAGCUAUAUACaaaUGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg--GUG- -5'
28261 3' -43 NC_005902.1 + 141935 0.79 0.962546
Target:  5'- uCUUUAACAgCUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUgGAUUcGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.