Results 81 - 100 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 50212 | 0.86 | 0.709533 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 23467 | 0.85 | 0.773464 |
Target: 5'- cCUUUAACACCUAAuCUAUAUACUUACu -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 147754 | 0.85 | 0.773464 |
Target: 5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 173890 | 0.85 | 0.783657 |
Target: 5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 1147 | 0.85 | 0.793687 |
Target: 5'- cCUUUAAgACCUAAGCUGUAUACaaACa -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 42241 | 0.84 | 0.822677 |
Target: 5'- -cUUAACACCUAAGCUAUAUACaaAUg -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 61622 | 0.83 | 0.840979 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACaaAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 95766 | 0.9 | 0.531605 |
Target: 5'- uUUUAACACUUAAGCUAUAUAUUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162594 | 0.9 | 0.520798 |
Target: 5'- ---aAAUACCUAAGCUAUAUACUCACu -3' miRNA: 3'- gaaaUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169513 | 0.92 | 0.46819 |
Target: 5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 116830 | 0.82 | 0.8974 |
Target: 5'- cCUUUAACAUCUAAGUUAUAUACaCCu- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUG-GGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 36165 | 0.81 | 0.923674 |
Target: 5'- uUUUAACAUCUAAGCUAUAUAUaaACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 103990 | 0.8 | 0.93509 |
Target: 5'- aUUUAAUAUUUAAGCUAUAUAUUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 166129 | 0.8 | 0.9545 |
Target: 5'- cCUUUAAUACUUAAGCUAUAUacauGCUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA----UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 61525 | 0.79 | 0.958658 |
Target: 5'- cCUUUAAUACUUAAGCUAUAUAUgaGCa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 47185 | 0.98 | 0.235511 |
Target: 5'- cCUUUAACACUUAAGCUAUAUACUCACc -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162391 | 0.96 | 0.305422 |
Target: 5'- cCUUUAACACCUAAGCUAcAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 145947 | 0.95 | 0.337544 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 95946 | 0.93 | 0.390188 |
Target: 5'- cCUUUAACACUUAAGUUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 128774 | 0.92 | 0.437965 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUUg- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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