Results 81 - 100 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 11043 | 0.7 | 0.999962 |
Target: 5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 136893 | 0.71 | 0.999906 |
Target: 5'- aUUUAACACCcAAGUUAUAUAUaaACa -3' miRNA: 3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 98940 | 0.7 | 0.999962 |
Target: 5'- cCUUUAACcCCUAAGCUAUAUAa---- -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUgggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 107921 | 0.71 | 0.999906 |
Target: 5'- cCUUUAuaaACuCUAAGCUAUAUACUUAUu -3' miRNA: 3'- -GAAAUug-UG-GAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 51970 | 0.71 | 0.999906 |
Target: 5'- -----uUACCUAAGCUAuaUAUACUCAUu -3' miRNA: 3'- gaaauuGUGGAUUCGAU--AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 43846 | 0.71 | 0.999876 |
Target: 5'- uCUUUAACuuUUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGugGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 167322 | 0.72 | 0.999838 |
Target: 5'- --gUAAUACCUAcAGCUuguuUACCCAUa -3' miRNA: 3'- gaaAUUGUGGAU-UCGAuau-AUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 15479 | 0.7 | 0.999986 |
Target: 5'- -gUUAAUGCUUAAGCUAUAUACa--- -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 174999 | 0.7 | 0.999986 |
Target: 5'- -gUUAAUA-CUAAGCUAUAUACUUAUu -3' miRNA: 3'- gaAAUUGUgGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 36802 | 0.7 | 0.99999 |
Target: 5'- uUUUAACACUUAAGCUAUA----CACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUauggGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 72222 | 0.69 | 0.999997 |
Target: 5'- -gUUAACACCUAAaCUAUAUAUaCAUa -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 46322 | 0.69 | 0.999997 |
Target: 5'- --aUAAgUACCcAAGCUAUAUAUUCACu -3' miRNA: 3'- gaaAUU-GUGGaUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 94139 | 0.69 | 0.999997 |
Target: 5'- aUUUAuccuuUAUUUAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUu----GUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 16890 | 0.69 | 0.999995 |
Target: 5'- uUUUAACAUCUAAGCUAUgaacaaGUGUCUAUa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUA------UAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 71324 | 0.69 | 0.999995 |
Target: 5'- -gUUAACAUCUAAGUUAUAUAUaaAUa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 95408 | 0.69 | 0.999995 |
Target: 5'- cCUUUAACACCUAAaUUAUAUAUgaACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 12827 | 0.69 | 0.999995 |
Target: 5'- cCUUUAACuCCUAAGUUAUAUAUaUAUa -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 175614 | 0.69 | 0.999993 |
Target: 5'- cCUUUAAUACgUAAGCcGUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 145342 | 0.69 | 0.999993 |
Target: 5'- -----uUAUCUAAGCUAUAUACaCACu -3' miRNA: 3'- gaaauuGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 160997 | 0.72 | 0.999838 |
Target: 5'- --gUAAUAUCUAAGCUAUAUACaaaUAUa -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGg--GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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