miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 95455 0.74 0.999994
Target:  5'- --aACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 5043 0.74 0.999994
Target:  5'- --aGCCCUUUAAcUCCUAaaGCGUUg-- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAU--UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 135648 0.74 0.999994
Target:  5'- --aACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 75820 0.73 0.999997
Target:  5'- -aUACCCUUUAAcaCCUAAauuauauauacCGUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUUuaGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 133560 0.73 0.999998
Target:  5'- --aACCCUUUAAAUCCUAGgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 11180 0.73 0.999998
Target:  5'- --aACCCUUUAAAUCCacauUGUUgaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGauu-GCAA--ACG- -5'
28266 3' -40.1 NC_005902.1 + 110166 0.73 0.999999
Target:  5'- -aUACCCUUUAAuUCCUAAgGcaUUGUc -3'
miRNA:   3'- gaAUGGGAAAUUuAGGAUUgCa-AACG- -5'
28266 3' -40.1 NC_005902.1 + 49950 0.66 1
Target:  5'- -aUACCCUUUAAcUCCUAAg------ -3'
miRNA:   3'- gaAUGGGAAAUUuAGGAUUgcaaacg -5'
28266 3' -40.1 NC_005902.1 + 81095 0.66 1
Target:  5'- --cAUCCUUUAAAcCCUGGCGa---- -3'
miRNA:   3'- gaaUGGGAAAUUUaGGAUUGCaaacg -5'
28266 3' -40.1 NC_005902.1 + 18693 0.72 1
Target:  5'- uUUACCCUUUAAuUCCUAAa----GCa -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 48072 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAg----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 153204 0.69 1
Target:  5'- -aUACCCUUUAAAccUUCUGcAUGUUuuuaaUGCa -3'
miRNA:   3'- gaAUGGGAAAUUU--AGGAU-UGCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 45100 0.68 1
Target:  5'- uUUACUUUUUAAuUCCUAAgGUaUUGUg -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 133833 0.71 1
Target:  5'- --cACCCUUUAAcaCCUAAgugauauaccUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 76022 0.7 1
Target:  5'- --aACCCUUUAAcUCCUAAgGUa--- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 122851 0.7 1
Target:  5'- -gUACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 17710 0.66 1
Target:  5'- -gUACCUUUUAAcUCC--ACG-UUGCg -3'
miRNA:   3'- gaAUGGGAAAUUuAGGauUGCaAACG- -5'
28266 3' -40.1 NC_005902.1 + 175690 0.7 1
Target:  5'- -cUACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 90001 0.7 1
Target:  5'- uUUACCCUUUAAcaCCUAA-GUUauauaUGCa -3'
miRNA:   3'- gAAUGGGAAAUUuaGGAUUgCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 36312 0.66 1
Target:  5'- --aACUCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.