miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 50367 0.8 0.997373
Target:  5'- --aACCCUUUAAAUCCUAACa----- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGcaaacg -5'
28266 3' -40.1 NC_005902.1 + 46252 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 143480 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 8629 0.79 0.998199
Target:  5'- --aACCCUUUAAAUCUUAugGcuuauacuugUUUGCg -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUugC----------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 151363 0.78 0.999023
Target:  5'- aCUUAUCCUUUAAAUCCUAAagcuuauacuCaUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 11126 0.78 0.999196
Target:  5'- --aACCCUUUAAAUCCauguuguUGAUGcUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGG-------AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 28926 0.78 0.999357
Target:  5'- -gUACCCUUUAAAUCCUAagcuuauACuuaUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAU-------UGc--AAACG- -5'
28266 3' -40.1 NC_005902.1 + 42241 0.77 0.999606
Target:  5'- --cACUCUUUAAAUCUUAA-GUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 111169 0.77 0.999606
Target:  5'- --aACCCUUUAAcUCCUAAUGcgUUGUu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUGCa-AACG- -5'
28266 3' -40.1 NC_005902.1 + 1480 0.77 0.999692
Target:  5'- -gUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 157139 0.77 0.999692
Target:  5'- aCUUACCCUUUAAcucAUCaCUGACag-UGCu -3'
miRNA:   3'- -GAAUGGGAAAUU---UAG-GAUUGcaaACG- -5'
28266 3' -40.1 NC_005902.1 + 76652 0.77 0.999816
Target:  5'- uUUACCCUUUAAcaUCUAA-GUUUGCu -3'
miRNA:   3'- gAAUGGGAAAUUuaGGAUUgCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 61421 0.76 0.999859
Target:  5'- --aAUCUUUUAAAUCCUAAUaUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 75930 0.76 0.999859
Target:  5'- aCUUACCUUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 12659 0.76 0.999893
Target:  5'- aCUUACCCUUUAAAUCUUAAgacauacaaGUgaGCa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUg--------CAaaCG- -5'
28266 3' -40.1 NC_005902.1 + 58524 0.76 0.99994
Target:  5'- uUUACCCUUUAAGacuUCCUGAU---UGCu -3'
miRNA:   3'- gAAUGGGAAAUUU---AGGAUUGcaaACG- -5'
28266 3' -40.1 NC_005902.1 + 97766 0.75 0.999956
Target:  5'- --aAUCCUUUAAAUCUUAAUGUUUa- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 55126 0.75 0.999956
Target:  5'- -gUACCCUUUAAAUCCUAagcuauaaACaaUUGUg -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAU--------UGcaAACG- -5'
28266 3' -40.1 NC_005902.1 + 146910 0.75 0.999968
Target:  5'- --aAUUCUUUAAuUCUUAAUGUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 5043 0.74 0.999994
Target:  5'- --aGCCCUUUAAcUCCUAaaGCGUUg-- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAU--UGCAAacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.