miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 14909 0.72 1
Target:  5'- --aGCCUUaaaauuuaaaggaUUAAAUCCUAACaUUUGCu -3'
miRNA:   3'- gaaUGGGA-------------AAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 11180 0.73 0.999998
Target:  5'- --aACCCUUUAAAUCCacauUGUUgaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGauu-GCAA--ACG- -5'
28266 3' -40.1 NC_005902.1 + 143480 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 10302 0.83 0.978941
Target:  5'- -cUACCUUUUAAAUCCUAAagcucauuacuUGUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 50103 0.68 1
Target:  5'- --aACCCUUU-GAUCCUAACa----- -3'
miRNA:   3'- gaaUGGGAAAuUUAGGAUUGcaaacg -5'
28266 3' -40.1 NC_005902.1 + 175937 0.7 1
Target:  5'- --aACCCUUUAAcUCCUAAgGUa--- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 163446 0.74 0.999994
Target:  5'- --aACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 130938 0.83 0.978941
Target:  5'- aCUUACCCUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 184514 0.71 1
Target:  5'- -gUAUCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 100272 0.84 0.973478
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGcuuauacuuaUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgC----------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 75820 0.73 0.999997
Target:  5'- -aUACCCUUUAAcaCCUAAauuauauauacCGUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUUuaGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 177367 0.71 1
Target:  5'- --aACCCUUUAAAUCUUAugGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUugCaaacg -5'
28266 3' -40.1 NC_005902.1 + 75930 0.76 0.999859
Target:  5'- aCUUACCUUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 11126 0.78 0.999196
Target:  5'- --aACCCUUUAAAUCCauguuguUGAUGcUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGG-------AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 139738 0.82 0.988927
Target:  5'- aCUUAUCCUUUAAAUCCUAAggcuuauacuUGUUUGa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACg -5'
28266 3' -40.1 NC_005902.1 + 39333 0.83 0.978941
Target:  5'- aCUUACUCUUUAAAUCCUAAuaucUGUggUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----GCAa-ACG- -5'
28266 3' -40.1 NC_005902.1 + 1095 0.67 1
Target:  5'- uUUACUCUUUAAAUUCUAuaauuaauuuaaaGCGUUa-- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAU-------------UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 81854 0.68 1
Target:  5'- --aACUCUUUAAcUCCUAagGCGUUauugaugaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAU--UGCAA--------ACG- -5'
28266 3' -40.1 NC_005902.1 + 112348 0.69 1
Target:  5'- uUUACCCUUUAAAaUCUAGUGUUUa- -3'
miRNA:   3'- gAAUGGGAAAUUUaGGAUUGCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 122832 0.7 1
Target:  5'- -aUAUCCUUUAAuUCCacacuuucaaUGACGUuUUGCa -3'
miRNA:   3'- gaAUGGGAAAUUuAGG----------AUUGCA-AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.