miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 173819 0.89 0.832583
Target:  5'- aCUUACCCUUUAAAUUCUAAagcucauauuUGUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 163446 0.74 0.999994
Target:  5'- --aACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 11180 0.73 0.999998
Target:  5'- --aACCCUUUAAAUCCacauUGUUgaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGauu-GCAA--ACG- -5'
28266 3' -40.1 NC_005902.1 + 81095 0.66 1
Target:  5'- --cAUCCUUUAAAcCCUGGCGa---- -3'
miRNA:   3'- gaaUGGGAAAUUUaGGAUUGCaaacg -5'
28266 3' -40.1 NC_005902.1 + 39333 0.83 0.978941
Target:  5'- aCUUACUCUUUAAAUCCUAAuaucUGUggUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----GCAa-ACG- -5'
28266 3' -40.1 NC_005902.1 + 81991 0.83 0.983522
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGUg--- -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 139738 0.82 0.988927
Target:  5'- aCUUAUCCUUUAAAUCCUAAggcuuauacuUGUUUGa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACg -5'
28266 3' -40.1 NC_005902.1 + 20116 0.82 0.990382
Target:  5'- aCUUACaCUUUAAAUCCUAAUaUUUGCu -3'
miRNA:   3'- -GAAUGgGAAAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 11126 0.78 0.999196
Target:  5'- --aACCCUUUAAAUCCauguuguUGAUGcUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGG-------AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 12659 0.76 0.999893
Target:  5'- aCUUACCCUUUAAAUCUUAAgacauacaaGUgaGCa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUg--------CAaaCG- -5'
28266 3' -40.1 NC_005902.1 + 76652 0.77 0.999816
Target:  5'- uUUACCCUUUAAcaUCUAA-GUUUGCu -3'
miRNA:   3'- gAAUGGGAAAUUuaGGAUUgCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 143480 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 100272 0.84 0.973478
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGcuuauacuuaUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgC----------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 75930 0.76 0.999859
Target:  5'- aCUUACCUUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 130938 0.83 0.978941
Target:  5'- aCUUACCCUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 50367 0.8 0.997373
Target:  5'- --aACCCUUUAAAUCCUAACa----- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGcaaacg -5'
28266 3' -40.1 NC_005902.1 + 61421 0.76 0.999859
Target:  5'- --aAUCUUUUAAAUCCUAAUaUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 75820 0.73 0.999997
Target:  5'- -aUACCCUUUAAcaCCUAAauuauauauacCGUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUUuaGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 10302 0.83 0.978941
Target:  5'- -cUACCUUUUAAAUCCUAAagcucauuacuUGUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 15864 0.82 0.985508
Target:  5'- uUUACCCUUUAAAUUCUAAgGUUUa- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCAAAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.