miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 1095 0.67 1
Target:  5'- uUUACUCUUUAAAUUCUAuaauuaauuuaaaGCGUUa-- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAU-------------UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 1480 0.77 0.999692
Target:  5'- -gUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 5043 0.74 0.999994
Target:  5'- --aGCCCUUUAAcUCCUAaaGCGUUg-- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAU--UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 8629 0.79 0.998199
Target:  5'- --aACCCUUUAAAUCUUAugGcuuauacuugUUUGCg -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUugC----------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 10302 0.83 0.978941
Target:  5'- -cUACCUUUUAAAUCCUAAagcucauuacuUGUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 11126 0.78 0.999196
Target:  5'- --aACCCUUUAAAUCCauguuguUGAUGcUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGG-------AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 11180 0.73 0.999998
Target:  5'- --aACCCUUUAAAUCCacauUGUUgaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGauu-GCAA--ACG- -5'
28266 3' -40.1 NC_005902.1 + 12173 0.68 1
Target:  5'- --aACUCUaUAAAUCCUAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAaAUUUAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 12659 0.76 0.999893
Target:  5'- aCUUACCCUUUAAAUCUUAAgacauacaaGUgaGCa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUg--------CAaaCG- -5'
28266 3' -40.1 NC_005902.1 + 12824 0.66 1
Target:  5'- --aACCCUUUAAcUCCUAA-GUUa-- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAAacg -5'
28266 3' -40.1 NC_005902.1 + 14909 0.72 1
Target:  5'- --aGCCUUaaaauuuaaaggaUUAAAUCCUAACaUUUGCu -3'
miRNA:   3'- gaaUGGGA-------------AAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 15864 0.82 0.985508
Target:  5'- uUUACCCUUUAAAUUCUAAgGUUUa- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 16803 0.66 1
Target:  5'- --aACCCUUUAAcUCCUAAg----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 17710 0.66 1
Target:  5'- -gUACCUUUUAAcUCC--ACG-UUGCg -3'
miRNA:   3'- gaAUGGGAAAUUuAGGauUGCaAACG- -5'
28266 3' -40.1 NC_005902.1 + 18693 0.72 1
Target:  5'- uUUACCCUUUAAuUCCUAAa----GCa -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 20116 0.82 0.990382
Target:  5'- aCUUACaCUUUAAAUCCUAAUaUUUGCu -3'
miRNA:   3'- -GAAUGgGAAAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 22552 0.81 0.993865
Target:  5'- --aAUCCUUUAAAUCCUAAggcuauacuUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUU---------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 24226 0.68 1
Target:  5'- -gUACCCUUUAAcuuuauGUCauuaaUGACGcUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUU------UAGg----AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 25064 0.69 1
Target:  5'- aUUAcCCCUUUAAcUCCUAaaGCGUUg-- -3'
miRNA:   3'- gAAU-GGGAAAUUuAGGAU--UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 27863 0.8 0.995561
Target:  5'- --aACCCUUUAAAUCUUAAggcuuauacuUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUU----------GCAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.