miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 184860 0.67 1
Target:  5'- --aACCCUUUAAcaCCUAAgcuguauauaugcuUGUUUGUa -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUU--------------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 184514 0.71 1
Target:  5'- -gUAUCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 184443 0.68 1
Target:  5'- --aACCCUUUAAcUCUUAAgGUgUUGUu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 177367 0.71 1
Target:  5'- --aACCCUUUAAAUCUUAugGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUugCaaacg -5'
28266 3' -40.1 NC_005902.1 + 175937 0.7 1
Target:  5'- --aACCCUUUAAcUCCUAAgGUa--- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 175690 0.7 1
Target:  5'- -cUACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 173819 0.89 0.832583
Target:  5'- aCUUACCCUUUAAAUUCUAAagcucauauuUGUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 171085 0.66 1
Target:  5'- --aACCUUUUAA-UCCUAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 169441 0.66 1
Target:  5'- --aACCCUUUAAcaCUUAAgcuguauauuUGUUUGCg -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 163446 0.74 0.999994
Target:  5'- --aACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 158181 1.03 0.287287
Target:  5'- --aACCCUUUAAAUCCUAAUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 157915 0.66 1
Target:  5'- -aUACCCUUUAAcUCCaugugucaucgaUGAUGcUUUGUg -3'
miRNA:   3'- gaAUGGGAAAUUuAGG------------AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 157139 0.77 0.999692
Target:  5'- aCUUACCCUUUAAcucAUCaCUGACag-UGCu -3'
miRNA:   3'- -GAAUGGGAAAUU---UAG-GAUUGcaaACG- -5'
28266 3' -40.1 NC_005902.1 + 153204 0.69 1
Target:  5'- -aUACCCUUUAAAccUUCUGcAUGUUuuuaaUGCa -3'
miRNA:   3'- gaAUGGGAAAUUU--AGGAU-UGCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 152913 0.67 1
Target:  5'- --cACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 151363 0.78 0.999023
Target:  5'- aCUUAUCCUUUAAAUCCUAAagcuuauacuCaUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 148141 0.71 1
Target:  5'- uUUACUCUcUAAAUCCUAAagcUGUaagUGCa -3'
miRNA:   3'- gAAUGGGAaAUUUAGGAUU---GCAa--ACG- -5'
28266 3' -40.1 NC_005902.1 + 146910 0.75 0.999968
Target:  5'- --aAUUCUUUAAuUCUUAAUGUUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 143480 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 142210 0.89 0.841687
Target:  5'- --aACCCUUUAAAUCCUAAgGcUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.