miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 42521 1.17 0.058558
Target:  5'- aCUUACCCUUUAAAUCCUAACGUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 158181 1.03 0.287287
Target:  5'- --aACCCUUUAAAUCCUAAUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 37868 0.9 0.823256
Target:  5'- uUUACCCUUUAAAUCCUAGCaUUcgcUGCa -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUGcAA---ACG- -5'
28266 3' -40.1 NC_005902.1 + 173819 0.89 0.832583
Target:  5'- aCUUACCCUUUAAAUUCUAAagcucauauuUGUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 142210 0.89 0.841687
Target:  5'- --aACCCUUUAAAUCCUAAgGcUUGCa -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaAACG- -5'
28266 3' -40.1 NC_005902.1 + 104897 0.87 0.898401
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGgUUGUa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgCaAACG- -5'
28266 3' -40.1 NC_005902.1 + 107371 0.86 0.924722
Target:  5'- --aACCCUUUAAAUCCUAGggcuuauacuUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 103882 0.85 0.946375
Target:  5'- uUUACCCUUUAAAUCCUAAaGUUuauaccUGCu -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCAA------ACG- -5'
28266 3' -40.1 NC_005902.1 + 114645 0.84 0.963461
Target:  5'- aCUUACCUUUUAAAUCCUAAgGUgguacUGUa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgCAa----ACG- -5'
28266 3' -40.1 NC_005902.1 + 100272 0.84 0.973478
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGcuuauacuuaUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgC----------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 39333 0.83 0.978941
Target:  5'- aCUUACUCUUUAAAUCCUAAuaucUGUggUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----GCAa-ACG- -5'
28266 3' -40.1 NC_005902.1 + 10302 0.83 0.978941
Target:  5'- -cUACCUUUUAAAUCCUAAagcucauuacuUGUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUU-----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 130938 0.83 0.978941
Target:  5'- aCUUACCCUUUAAAUCCUAAa----GCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 81991 0.83 0.983522
Target:  5'- aCUUAUCCUUUAAAUCCUAAgGUg--- -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 15864 0.82 0.985508
Target:  5'- uUUACCCUUUAAAUUCUAAgGUUUa- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 139738 0.82 0.988927
Target:  5'- aCUUAUCCUUUAAAUCCUAAggcuuauacuUGUUUGa -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----------GCAAACg -5'
28266 3' -40.1 NC_005902.1 + 20116 0.82 0.990382
Target:  5'- aCUUACaCUUUAAAUCCUAAUaUUUGCu -3'
miRNA:   3'- -GAAUGgGAAAUUUAGGAUUGcAAACG- -5'
28266 3' -40.1 NC_005902.1 + 22552 0.81 0.993865
Target:  5'- --aAUCCUUUAAAUCCUAAggcuauacuUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUU---------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 27863 0.8 0.995561
Target:  5'- --aACCCUUUAAAUCUUAAggcuuauacuUGUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUU----------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 134640 0.8 0.997373
Target:  5'- --aACCCUUUAAuUCCUAAUGUgUUGUu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUGCA-AACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.