miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 28081 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAaGUa--- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 28926 0.78 0.999357
Target:  5'- -gUACCCUUUAAAUCCUAagcuuauACuuaUUUGCu -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAU-------UGc--AAACG- -5'
28266 3' -40.1 NC_005902.1 + 33807 0.66 1
Target:  5'- -aUAUCCUgUAAcaCCUGugGUUUGa -3'
miRNA:   3'- gaAUGGGAaAUUuaGGAUugCAAACg -5'
28266 3' -40.1 NC_005902.1 + 34630 0.66 1
Target:  5'- --aACCCUUUAAAUUCcAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGaUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 34872 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAgGcUUUa- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgC-AAAcg -5'
28266 3' -40.1 NC_005902.1 + 36095 0.66 1
Target:  5'- --aACCCUUUAAcaCCUAAgGUgugGUu -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUUgCAaa-CG- -5'
28266 3' -40.1 NC_005902.1 + 36312 0.66 1
Target:  5'- --aACUCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 37868 0.9 0.823256
Target:  5'- uUUACCCUUUAAAUCCUAGCaUUcgcUGCa -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUGcAA---ACG- -5'
28266 3' -40.1 NC_005902.1 + 39333 0.83 0.978941
Target:  5'- aCUUACUCUUUAAAUCCUAAuaucUGUggUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUU----GCAa-ACG- -5'
28266 3' -40.1 NC_005902.1 + 42241 0.77 0.999606
Target:  5'- --cACUCUUUAAAUCUUAA-GUUUGCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 42521 1.17 0.058558
Target:  5'- aCUUACCCUUUAAAUCCUAACGUUUGCu -3'
miRNA:   3'- -GAAUGGGAAAUUUAGGAUUGCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 45100 0.68 1
Target:  5'- uUUACUUUUUAAuUCCUAAgGUaUUGUg -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 46252 0.79 0.997819
Target:  5'- uUUACCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 48072 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAg----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 48317 0.66 1
Target:  5'- -aUACCCUUUAAuUCCUuua---UGCa -3'
miRNA:   3'- gaAUGGGAAAUUuAGGAuugcaaACG- -5'
28266 3' -40.1 NC_005902.1 + 49880 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAa----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 49950 0.66 1
Target:  5'- -aUACCCUUUAAcUCCUAAg------ -3'
miRNA:   3'- gaAUGGGAAAUUuAGGAUUgcaaacg -5'
28266 3' -40.1 NC_005902.1 + 49981 0.67 1
Target:  5'- --aACCCUUUAAcUCCUAAgGcaucaucaauaaugcUUUGUg -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgC---------------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 50040 0.7 1
Target:  5'- uUUACCCUUUAAcaCCUAagcuAUGUucauUUGCu -3'
miRNA:   3'- gAAUGGGAAAUUuaGGAU----UGCA----AACG- -5'
28266 3' -40.1 NC_005902.1 + 50103 0.68 1
Target:  5'- --aACCCUUU-GAUCCUAACa----- -3'
miRNA:   3'- gaaUGGGAAAuUUAGGAUUGcaaacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.