miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 12824 0.66 1
Target:  5'- --aACCCUUUAAcUCCUAA-GUUa-- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAAacg -5'
28266 3' -40.1 NC_005902.1 + 49880 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAa----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 63166 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAg----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 67535 0.66 1
Target:  5'- --aAUCCUUUAAAUUUUAAgGUaUGUg -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCAaACG- -5'
28266 3' -40.1 NC_005902.1 + 49981 0.67 1
Target:  5'- --aACCCUUUAAcUCCUAAgGcaucaucaauaaugcUUUGUg -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgC---------------AAACG- -5'
28266 3' -40.1 NC_005902.1 + 184860 0.67 1
Target:  5'- --aACCCUUUAAcaCCUAAgcuguauauaugcuUGUUUGUa -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUU--------------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 1095 0.67 1
Target:  5'- uUUACUCUUUAAAUUCUAuaauuaauuuaaaGCGUUa-- -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAU-------------UGCAAacg -5'
28266 3' -40.1 NC_005902.1 + 133155 0.67 1
Target:  5'- uUUAUCCUUUAAcUCUUAAgGUaUUGUu -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 152913 0.67 1
Target:  5'- --cACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 137565 0.67 1
Target:  5'- --aACCUUUUGAAUCCUAAa----GCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 116773 0.67 1
Target:  5'- --cACCCUUUAAAUUCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 90539 0.67 1
Target:  5'- uUUAUCCUUUGAAUCUUAAagcuuauacuUGUUuacuaUGCu -3'
miRNA:   3'- gAAUGGGAAAUUUAGGAUU----------GCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 50103 0.68 1
Target:  5'- --aACCCUUU-GAUCCUAACa----- -3'
miRNA:   3'- gaaUGGGAAAuUUAGGAUUGcaaacg -5'
28266 3' -40.1 NC_005902.1 + 184443 0.68 1
Target:  5'- --aACCCUUUAAcUCUUAAgGUgUUGUu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 12173 0.68 1
Target:  5'- --aACUCUaUAAAUCCUAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAaAUUUAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 24226 0.68 1
Target:  5'- -gUACCCUUUAAcuuuauGUCauuaaUGACGcUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUU------UAGg----AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 45100 0.68 1
Target:  5'- uUUACUUUUUAAuUCCUAAgGUaUUGUg -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 120372 0.68 1
Target:  5'- ---cCCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaauGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 81854 0.68 1
Target:  5'- --aACUCUUUAAcUCCUAagGCGUUauugaugaUGCu -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAU--UGCAA--------ACG- -5'
28266 3' -40.1 NC_005902.1 + 153204 0.69 1
Target:  5'- -aUACCCUUUAAAccUUCUGcAUGUUuuuaaUGCa -3'
miRNA:   3'- gaAUGGGAAAUUU--AGGAU-UGCAA-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.