Results 21 - 40 of 205 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 34672 | 0.67 | 1 |
Target: 5'- uGAGUAUA-AGCUUuaGGAU-UUAAAGGAu -3' miRNA: 3'- -CUCAUAUaUCGAA--CCUAcAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 154625 | 0.67 | 1 |
Target: 5'- -uGUAUAUAGCUUaGGUaUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUAcAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 131155 | 0.67 | 1 |
Target: 5'- -uGUAUAUAGCUUaGGUaUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUAcAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 145073 | 0.67 | 1 |
Target: 5'- -uGUAUAUAGCUUaGGUaUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUAcAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 11071 | 0.67 | 1 |
Target: 5'- -uGUAUAUAGCUUaaGUGUUAGAAu- -3' miRNA: 3'- cuCAUAUAUCGAAccUACAAUUUUcu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 136001 | 0.67 | 1 |
Target: 5'- -----cAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- cucauaUAUCGAAcCUACAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 169154 | 0.67 | 1 |
Target: 5'- -uGUucAUAGCUUaGAUGUUAAAAGu -3' miRNA: 3'- cuCAuaUAUCGAAcCUACAAUUUUCu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 148784 | 0.67 | 1 |
Target: 5'- -uGUAUAUAGCUUaaGUGUUAAGAu- -3' miRNA: 3'- cuCAUAUAUCGAAccUACAAUUUUcu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 28192 | 0.67 | 1 |
Target: 5'- --aUAUAUAGCUUaGGUGUUAAAuauuGAa -3' miRNA: 3'- cucAUAUAUCGAAcCUACAAUUUu---CU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 90094 | 0.67 | 1 |
Target: 5'- uGAGUAUAUAaCUUaaGUGUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUcGAAccUACAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 16527 | 0.67 | 1 |
Target: 5'- uGAGaUAUAUAGCUcaGGUGUU-AAAGAg -3' miRNA: 3'- -CUC-AUAUAUCGAacCUACAAuUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 36941 | 0.67 | 1 |
Target: 5'- uGAGUA---AGCcUGGA-GUUAAAAGGu -3' miRNA: 3'- -CUCAUauaUCGaACCUaCAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 69212 | 0.67 | 1 |
Target: 5'- -uGUAUAUAaCUUaGAUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 156829 | 0.68 | 1 |
Target: 5'- --aUAUAUAGCUUaGGUGUU-AAAGAg -3' miRNA: 3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 48268 | 0.68 | 1 |
Target: 5'- --aUAUAUAGCUUaGGUGUUAAAAa- -3' miRNA: 3'- cucAUAUAUCGAAcCUACAAUUUUcu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 146762 | 0.68 | 1 |
Target: 5'- aAGUAUAUacauGGUUUaGGUGUUAGAGGGu -3' miRNA: 3'- cUCAUAUA----UCGAAcCUACAAUUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 36840 | 0.68 | 1 |
Target: 5'- uGAGUAUAUAGCUUaGGUaUUAAAAa- -3' miRNA: 3'- -CUCAUAUAUCGAAcCUAcAAUUUUcu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 114843 | 0.68 | 1 |
Target: 5'- -uGUAUAUAGCUUaaGUGUUAAAAa- -3' miRNA: 3'- cuCAUAUAUCGAAccUACAAUUUUcu -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 170619 | 0.68 | 1 |
Target: 5'- --aUAUAUAGCUUaGGUGUU-AAAGAg -3' miRNA: 3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5' |
|||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 63138 | 0.68 | 1 |
Target: 5'- aAGUAUAUcaCUUaGAUGUUAAAAGAu -3' miRNA: 3'- cUCAUAUAucGAAcCUACAAUUUUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home