miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 5' -39.6 NC_005902.1 + 16527 0.67 1
Target:  5'- uGAGaUAUAUAGCUcaGGUGUU-AAAGAg -3'
miRNA:   3'- -CUC-AUAUAUCGAacCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 16919 0.76 0.999919
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 18885 0.86 0.925849
Target:  5'- aAGUAUAUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 20153 0.83 0.977432
Target:  5'- -cGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 20325 0.71 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAuAGAu -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUuUCU- -5'
28267 5' -39.6 NC_005902.1 + 22655 0.79 0.99873
Target:  5'- --aUAUAUAGCUUaGAUGUUAAAAGGg -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 23290 0.66 1
Target:  5'- ---cAUAUAGCUUaaAUGUUAAAGGGa -3'
miRNA:   3'- cucaUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 23443 0.66 1
Target:  5'- -uGUAUAUAGCUUGaauGUGUUAGc--- -3'
miRNA:   3'- cuCAUAUAUCGAACc--UACAAUUuucu -5'
28267 5' -39.6 NC_005902.1 + 23507 0.75 0.999968
Target:  5'- -uGUAUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 23650 0.91 0.750678
Target:  5'- uGAGUAUGUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 25159 0.75 0.999988
Target:  5'- uGAGUAUAUAGCUUaGGG-GUUAAAu-- -3'
miRNA:   3'- -CUCAUAUAUCGAA-CCUaCAAUUUucu -5'
28267 5' -39.6 NC_005902.1 + 26529 0.72 1
Target:  5'- uGAGUAUAuaaUAGCUUaaAUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAU---AUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 28192 0.67 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAuauuGAa -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUu---CU- -5'
28267 5' -39.6 NC_005902.1 + 28813 0.83 0.984477
Target:  5'- -uGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 29254 0.77 0.999753
Target:  5'- aAGUAUAUAGCUUaGGUGUUAGGAu- -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 29487 0.8 0.996013
Target:  5'- uGAGUAaauaUAUAGCUUaGGUGUUAAAAGGg -3'
miRNA:   3'- -CUCAU----AUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 29611 0.83 0.977432
Target:  5'- -uGUAUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 30829 0.84 0.968274
Target:  5'- -uGUAUAUAGCUUaGAUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 31124 1.12 0.103602
Target:  5'- uGAGUAUAUAGCUUGGAUGUUAAAAGAu -3'
miRNA:   3'- -CUCAUAUAUCGAACCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 31457 0.73 0.999998
Target:  5'- uGAGUAUAUAGCUUaGGuaaaggGUUAAAAa- -3'
miRNA:   3'- -CUCAUAUAUCGAA-CCua----CAAUUUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.