miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 5' -39.6 NC_005902.1 + 1178 0.66 1
Target:  5'- --aUAUAUacAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUA--UCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 1289 0.66 1
Target:  5'- uGAGUAuaUAUAGCUcaGGUGUUAGGAu- -3'
miRNA:   3'- -CUCAU--AUAUCGAacCUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 1450 0.75 0.999988
Target:  5'- uGAGUAUAUAGCUUaaGUGUUAAAGc- -3'
miRNA:   3'- -CUCAUAUAUCGAAccUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 3109 0.68 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 3478 0.75 0.999988
Target:  5'- -uGUAUAUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 5214 0.73 0.999999
Target:  5'- uGAGUAUAUcGCUUaGGUGUUAGGuAGAa -3'
miRNA:   3'- -CUCAUAUAuCGAAcCUACAAUUU-UCU- -5'
28267 5' -39.6 NC_005902.1 + 5422 0.68 1
Target:  5'- --aUAUAUAGCUUaGGUGUU-AAAGAa -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 5691 0.68 1
Target:  5'- -uGUAUAUAGCUUaGGG-GUU-AAAGAa -3'
miRNA:   3'- cuCAUAUAUCGAA-CCUaCAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 6228 0.81 0.99442
Target:  5'- uGAGUAUAUAGCUUaGuUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCuACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 6341 0.68 1
Target:  5'- uGAGUAuaUAUAGCUUaGGUuUUAAAGGAu -3'
miRNA:   3'- -CUCAU--AUAUCGAAcCUAcAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 8442 0.71 1
Target:  5'- uGAGUAUAucaaauaaUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAU--------AUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 10284 0.68 1
Target:  5'- -uGUAUAUAGCUUGGA-GUa------ -3'
miRNA:   3'- cuCAUAUAUCGAACCUaCAauuuucu -5'
28267 5' -39.6 NC_005902.1 + 11071 0.67 1
Target:  5'- -uGUAUAUAGCUUaaGUGUUAGAAu- -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 11449 0.71 1
Target:  5'- -cGUAUAUAGCUUaGGUGUUAAc--- -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUuucu -5'
28267 5' -39.6 NC_005902.1 + 11577 0.81 0.995271
Target:  5'- aAGUAUAUAGCUUaGAUGUaAAAAGAu -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAaUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 13226 0.76 0.999919
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 13435 0.79 0.998974
Target:  5'- aAGUAUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- cUCAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 15192 0.75 0.999988
Target:  5'- -uGUAUAUAGCUUacAUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 15341 0.68 1
Target:  5'- --aUAUAUAGCUUaGGUGUU-AAAGAg -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 15503 0.74 0.999996
Target:  5'- uGAGUGUAuauaUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAU----AUCGAAcCUACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.