Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 114436 | 0.93 | 0.672119 |
Target: 5'- uGAGUAUAUAGCUUaGGUGUUAAAGGAu -3' miRNA: 3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 29611 | 0.83 | 0.977432 |
Target: 5'- -uGUAUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 156430 | 0.83 | 0.982345 |
Target: 5'- uGAGUAUAUAGCUUaaAUGUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUCGAAccUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 161734 | 0.66 | 1 |
Target: 5'- aGAGUGUAUGGCcua-GUGUU-AAAGAg -3' miRNA: 3'- -CUCAUAUAUCGaaccUACAAuUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 67030 | 0.87 | 0.913136 |
Target: 5'- uGAGUAUAUAGCUUaGGA-GUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUCGAA-CCUaCAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 162631 | 0.86 | 0.925849 |
Target: 5'- -uGUAUAUAGCUUGGGUGUUAAc--- -3' miRNA: 3'- cuCAUAUAUCGAACCUACAAUUuucu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 122802 | 0.85 | 0.947638 |
Target: 5'- cGAGUAUAUAGCUUaGGG-GUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUCGAA-CCUaCAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 154953 | 0.85 | 0.947638 |
Target: 5'- -uGUucAUAGCUUGGGUGUUAAAAGGu -3' miRNA: 3'- cuCAuaUAUCGAACCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 58261 | 0.84 | 0.964705 |
Target: 5'- uGAGUAUAUAGCUUcaGUGUUAAAAGGu -3' miRNA: 3'- -CUCAUAUAUCGAAccUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 20153 | 0.83 | 0.977432 |
Target: 5'- -cGUAUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 30829 | 0.84 | 0.968274 |
Target: 5'- -uGUAUAUAGCUUaGAUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 134366 | 0.85 | 0.956743 |
Target: 5'- uGAGUAUAUAGCUUaaGUGUUAAAAGGg -3' miRNA: 3'- -CUCAUAUAUCGAAccUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 45358 | 0.91 | 0.750678 |
Target: 5'- ----uUAUAGCUUGGAUGUUAAAAGAg -3' miRNA: 3'- cucauAUAUCGAACCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 134192 | 0.84 | 0.968274 |
Target: 5'- -uGUAUAUAGCUUaGAUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 42265 | 0.91 | 0.772128 |
Target: 5'- uGAGUAUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 39307 | 0.85 | 0.956743 |
Target: 5'- -uGUAUAUAGCUUaGGUGUUAAAGGAu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 167185 | 0.84 | 0.968274 |
Target: 5'- -cGUAUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 142026 | 0.83 | 0.977432 |
Target: 5'- -uGUAUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 80775 | 0.89 | 0.859363 |
Target: 5'- uGGGUAUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 169575 | 0.86 | 0.925849 |
Target: 5'- cGAGUGUAUAGUUUaGGUGUUAAAAGGu -3' miRNA: 3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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