miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 5' -39.6 NC_005902.1 + 31124 1.12 0.103602
Target:  5'- uGAGUAUAUAGCUUGGAUGUUAAAAGAu -3'
miRNA:   3'- -CUCAUAUAUCGAACCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 164729 0.94 0.649107
Target:  5'- aGAGUAUAUAGCUUaGAUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 114436 0.93 0.672119
Target:  5'- uGAGUAUAUAGCUUaGGUGUUAAAGGAu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 43020 0.92 0.706293
Target:  5'- uGAGUAUAUAGCUUaGAUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 40093 0.92 0.706293
Target:  5'- uGAGUAUAUAGCUUaGAUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 23650 0.91 0.750678
Target:  5'- uGAGUAUGUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 45358 0.91 0.750678
Target:  5'- ----uUAUAGCUUGGAUGUUAAAAGAg -3'
miRNA:   3'- cucauAUAUCGAACCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 86483 0.91 0.772128
Target:  5'- uGAGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 42265 0.91 0.772128
Target:  5'- uGAGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 131169 0.91 0.772128
Target:  5'- uGAGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 172856 0.89 0.859363
Target:  5'- uGGGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 80775 0.89 0.859363
Target:  5'- uGGGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 48607 0.88 0.876142
Target:  5'- cAGUGUAUAGCUUaGAUGUUAAAAGGu -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 49993 0.87 0.913136
Target:  5'- uGAGUAUAUAGCUUaGGA-GUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAA-CCUaCAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 67030 0.87 0.913136
Target:  5'- uGAGUAUAUAGCUUaGGA-GUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAA-CCUaCAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 140961 0.87 0.919644
Target:  5'- aAGUAUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 162631 0.86 0.925849
Target:  5'- -uGUAUAUAGCUUGGGUGUUAAc--- -3'
miRNA:   3'- cuCAUAUAUCGAACCUACAAUUuucu -5'
28267 5' -39.6 NC_005902.1 + 169575 0.86 0.925849
Target:  5'- cGAGUGUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 135220 0.86 0.925849
Target:  5'- uGAGUAUAUAGUUUaGAUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 18885 0.86 0.925849
Target:  5'- aAGUAUAUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- cUCAUAUAUCGAAcCUACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.