Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 5' | -39.6 | NC_005902.1 | + | 50049 | 0.66 | 1 |
Target: 5'- uGAGUgaAUAUA-CUUaGGUGUUAAAAGAu -3' miRNA: 3'- -CUCA--UAUAUcGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 23443 | 0.66 | 1 |
Target: 5'- -uGUAUAUAGCUUGaauGUGUUAGc--- -3' miRNA: 3'- cuCAUAUAUCGAACc--UACAAUUuucu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 23290 | 0.66 | 1 |
Target: 5'- ---cAUAUAGCUUaaAUGUUAAAGGGa -3' miRNA: 3'- cucaUAUAUCGAAccUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 167292 | 0.66 | 1 |
Target: 5'- -uGUAUAUAaCUUaGGUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 1289 | 0.66 | 1 |
Target: 5'- uGAGUAuaUAUAGCUcaGGUGUUAGGAu- -3' miRNA: 3'- -CUCAU--AUAUCGAacCUACAAUUUUcu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 97477 | 0.66 | 1 |
Target: 5'- -uGUAUAUAaCUUaGGUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 161734 | 0.66 | 1 |
Target: 5'- aGAGUGUAUGGCcua-GUGUU-AAAGAg -3' miRNA: 3'- -CUCAUAUAUCGaaccUACAAuUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 49151 | 0.66 | 1 |
Target: 5'- --aUAUAUAaCUUGGGUGUUAAAu-- -3' miRNA: 3'- cucAUAUAUcGAACCUACAAUUUucu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 163421 | 0.66 | 1 |
Target: 5'- uGAGUAaauaUAUAGCUUaGGUGUUAAc--- -3' miRNA: 3'- -CUCAU----AUAUCGAAcCUACAAUUuucu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 1178 | 0.66 | 1 |
Target: 5'- --aUAUAUacAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- cucAUAUA--UCGAAcCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 44105 | 0.66 | 1 |
Target: 5'- uGAGUAUAUAGUUUaGcUGUU-AAAGAg -3' miRNA: 3'- -CUCAUAUAUCGAAcCuACAAuUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 151330 | 0.66 | 1 |
Target: 5'- --aUAUAUAGUauaGGUGUUAAAAGAa -3' miRNA: 3'- cucAUAUAUCGaacCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 182967 | 0.66 | 1 |
Target: 5'- --aUAUAUAGCUUaGGUGUUAAAu-- -3' miRNA: 3'- cucAUAUAUCGAAcCUACAAUUUucu -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 78901 | 0.66 | 1 |
Target: 5'- --aUAUAUAGCUUagaGGGUGgaUAAAAGGu -3' miRNA: 3'- cucAUAUAUCGAA---CCUACa-AUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 72257 | 0.66 | 1 |
Target: 5'- --aUAUAUAGCUUaGuUGUUAAAGGGu -3' miRNA: 3'- cucAUAUAUCGAAcCuACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 120290 | 0.66 | 1 |
Target: 5'- --aUAUAUAGUUcaGGUGUUAAAGGAu -3' miRNA: 3'- cucAUAUAUCGAacCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 44046 | 0.66 | 1 |
Target: 5'- -uGUAUAUAGCUUaaAUGUU-AAAGAg -3' miRNA: 3'- cuCAUAUAUCGAAccUACAAuUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 84969 | 0.66 | 1 |
Target: 5'- --aUAUAUAGUguaGAUGUUAAAGGGu -3' miRNA: 3'- cucAUAUAUCGaacCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 71498 | 0.66 | 1 |
Target: 5'- --uUAUAUAGCcuaGGUGUUAAAGGGg -3' miRNA: 3'- cucAUAUAUCGaacCUACAAUUUUCU- -5' |
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28267 | 5' | -39.6 | NC_005902.1 | + | 69212 | 0.67 | 1 |
Target: 5'- -uGUAUAUAaCUUaGAUGUUAAAGGGu -3' miRNA: 3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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