miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 5' -39.6 NC_005902.1 + 184631 0.69 1
Target:  5'- -cGUAUAUAGCUUaGGG-GUUAAAAa- -3'
miRNA:   3'- cuCAUAUAUCGAA-CCUaCAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 183018 0.8 0.996656
Target:  5'- uGAGUAUAUAGCUUaGAUGUUAAu--- -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUuucu -5'
28267 5' -39.6 NC_005902.1 + 182967 0.66 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAu-- -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUucu -5'
28267 5' -39.6 NC_005902.1 + 181430 0.78 0.999176
Target:  5'- aAGUAUAUcGCUUaGAUGUUAAAGGAu -3'
miRNA:   3'- cUCAUAUAuCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 180391 0.8 0.997689
Target:  5'- uGAGUAUAUAGCUUaauUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAccuACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 178439 0.69 1
Target:  5'- uGAGUAUAUAaUUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUcGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 177869 0.69 1
Target:  5'- aAGUAUAUAGCUUaaAUGUUAGGAu- -3'
miRNA:   3'- cUCAUAUAUCGAAccUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 172856 0.89 0.859363
Target:  5'- uGGGUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 170890 0.79 0.998974
Target:  5'- aAGUAUAUAGCUUacAUGUUAAAAGGu -3'
miRNA:   3'- cUCAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 170619 0.68 1
Target:  5'- --aUAUAUAGCUUaGGUGUU-AAAGAg -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 169575 0.86 0.925849
Target:  5'- cGAGUGUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 169167 0.76 0.99994
Target:  5'- ---gAUAUAGCUUaGGUGUUAAAGGAu -3'
miRNA:   3'- cucaUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 169154 0.67 1
Target:  5'- -uGUucAUAGCUUaGAUGUUAAAAGu -3'
miRNA:   3'- cuCAuaUAUCGAAcCUACAAUUUUCu -5'
28267 5' -39.6 NC_005902.1 + 167292 0.66 1
Target:  5'- -uGUAUAUAaCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 167185 0.84 0.968274
Target:  5'- -cGUAUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 165979 0.75 0.999988
Target:  5'- -uGUAUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 164874 0.69 1
Target:  5'- --aUAUAUAGCUUaaGUGUUAAAGGGa -3'
miRNA:   3'- cucAUAUAUCGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 164729 0.94 0.649107
Target:  5'- aGAGUAUAUAGCUUaGAUGUUAAAAGGu -3'
miRNA:   3'- -CUCAUAUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 163421 0.66 1
Target:  5'- uGAGUAaauaUAUAGCUUaGGUGUUAAc--- -3'
miRNA:   3'- -CUCAU----AUAUCGAAcCUACAAUUuucu -5'
28267 5' -39.6 NC_005902.1 + 162785 0.76 0.999919
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.