Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 184557 | 0.66 | 1 |
Target: 5'- cUCAUAUa----AGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGUAcauacUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 177401 | 0.67 | 1 |
Target: 5'- aUCGCAaacaaGUAUaAGCCaUAAGAUUUAAa -3' miRNA: 3'- -AGUGUa----CAUAcUCGGaAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 175731 | 0.74 | 0.999699 |
Target: 5'- -aACAaGUaAUGAGCUUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCA-UACUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 173374 | 0.7 | 0.999999 |
Target: 5'- cUCACuUGUAU--GUCUUAAGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcuCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 170674 | 0.68 | 1 |
Target: 5'- cUCACuuAUGUA--AGCUUUAGGGUUUAAc -3' miRNA: 3'- -AGUG--UACAUacUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 169633 | 0.68 | 1 |
Target: 5'- gCACAcuUGUAUaaAGCUUUGGGAUUUAAu -3' miRNA: 3'- aGUGU--ACAUAc-UCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 168398 | 0.68 | 1 |
Target: 5'- -aAUAaGUAUaAGCCUUAGGGUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 163485 | 0.72 | 0.999923 |
Target: 5'- -aACAaGUAU-AGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 161881 | 0.77 | 0.992742 |
Target: 5'- -aACAaGUAUGAGCCUU-GGAUUUAAu -3' miRNA: 3'- agUGUaCAUACUCGGAAuUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 158173 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 156493 | 0.7 | 0.999999 |
Target: 5'- uUCACAUcauugAUGAuGCCUUAAGAgUUAAa -3' miRNA: 3'- -AGUGUAca---UACU-CGGAAUUCUaAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 152948 | 0.72 | 0.99997 |
Target: 5'- aCGCuugauUGUAUauaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGu----ACAUAc--UCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149798 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149721 | 0.83 | 0.909833 |
Target: 5'- cUCACuUGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149285 | 0.7 | 0.999999 |
Target: 5'- aCAuCAUcgAUGAuGCCUUAGGAUUUAAa -3' miRNA: 3'- aGU-GUAcaUACU-CGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 139779 | 0.67 | 1 |
Target: 5'- cUCAUuuaUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 139052 | 0.76 | 0.997814 |
Target: 5'- ---aGUGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agugUACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 117037 | 0.71 | 0.999989 |
Target: 5'- -aGCAaauagGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUa----CAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 113106 | 0.7 | 0.999995 |
Target: 5'- cUACAUuuacuaGUAUaAGCCUUAAGGUUUAAa -3' miRNA: 3'- aGUGUA------CAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 110100 | 0.77 | 0.99552 |
Target: 5'- uUCACuUGUAUaAGCUUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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