miRNA display CGI

Results 41 - 48 of 48 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28268	5'	-41.7	NC_005902.1	+	177401	0.67	1
	Target:  5'- aUCGCAaacaaGUAUaAGCCaUAAGAUUUAAa -3' miRNA:   3'- -AGUGUa----CAUAcUCGGaAUUCUAAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	139779	0.67	1
	Target:  5'- cUCAUuuaUAUaAGCCUUAGGAUUUAAa -3' miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	42328	0.66	1
	Target:  5'- uUUGCAUcGU-UGAuaauGCCUUAAGAUUUAAa -3' miRNA:   3'- -AGUGUA-CAuACU----CGGAAUUCUAAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	184557	0.66	1
	Target:  5'- cUCAUAUa----AGCCUUAGGAUUUAAa -3' miRNA:   3'- -AGUGUAcauacUCGGAAUUCUAAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	88545	0.66	1
	Target:  5'- aCACA------AGCCUUGAGAUUUAAc -3' miRNA:   3'- aGUGUacauacUCGGAAUUCUAAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	95540	0.66	1
	Target:  5'- cCACAUcGUcaucgAUGAuGCCUUAAGAgUUAAa -3' miRNA:   3'- aGUGUA-CA-----UACU-CGGAAUUCUaAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	17723	0.66	1
	Target:  5'- cCACGUugcgAUGAuGCCUUAGGAaUUAAa -3' miRNA:   3'- aGUGUAca--UACU-CGGAAUUCUaAAUU- -5'
28268	5'	-41.7	NC_005902.1	+	69154	0.66	1
	Target:  5'- cUCACuUGUAU-AGUCUUAGGAaUUAAa -3' miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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