Results 1 - 20 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 127607 | 0.66 | 1 |
Target: 5'- -aAAUUUgUUAAUGCUUAAGCUAUGUu -3' miRNA: 3'- aaUUGGAaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 48459 | 0.66 | 1 |
Target: 5'- -cAACCUUUUAGCuCCUAuGGCa---- -3' miRNA: 3'- aaUUGGAAAAUUGuGGAU-UCGauaua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 5112 | 0.66 | 1 |
Target: 5'- --cACUcUUUAACAUCUAAGCaAUAUa -3' miRNA: 3'- aauUGGaAAAUUGUGGAUUCGaUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 160975 | 0.66 | 1 |
Target: 5'- -cAACgCUUUaggaguuaaaggggUAAUAUCUAAGCUAUAUa -3' miRNA: 3'- aaUUG-GAAA--------------AUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 58804 | 0.66 | 1 |
Target: 5'- --uACUUUUUAACauuuuaaACUUAAGCUAUAa -3' miRNA: 3'- aauUGGAAAAUUG-------UGGAUUCGAUAUa -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 84812 | 0.67 | 1 |
Target: 5'- uUUAACCcUUUAAC-UCUuAGCUAUAUg -3' miRNA: 3'- -AAUUGGaAAAUUGuGGAuUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 39405 | 0.67 | 1 |
Target: 5'- gUUAAaggug-AAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUggaaaaUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 23406 | 0.67 | 1 |
Target: 5'- gUUAAagggUUAACACCcAAGCUAUAUa -3' miRNA: 3'- -AAUUggaaAAUUGUGGaUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 160882 | 0.67 | 1 |
Target: 5'- ------aUUUAACcCCUAAGCUAUAUa -3' miRNA: 3'- aauuggaAAAUUGuGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 124330 | 0.66 | 1 |
Target: 5'- uUUAAUCUUUUAAUACUUAAaaUAUAUg -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUcgAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 148614 | 0.66 | 1 |
Target: 5'- uUUAACCcUUUAAUACCUAuaUUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUucGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 23974 | 0.66 | 1 |
Target: 5'- uUUAAUCcUUUAACAUCUAAaCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 76020 | 0.66 | 1 |
Target: 5'- gUAACCcUUUAACuCCUAAGgUAUu- -3' miRNA: 3'- aAUUGGaAAAUUGuGGAUUCgAUAua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 179466 | 0.66 | 1 |
Target: 5'- uUUAAagggUUAACACCUAAGUUAUu- -3' miRNA: 3'- -AAUUggaaAAUUGUGGAUUCGAUAua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 171082 | 0.66 | 1 |
Target: 5'- uUUAACCUUUUAAU-CCUAAGgUuUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGuGGAUUCgAuAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169979 | 0.66 | 1 |
Target: 5'- aUUAACCcuu---UAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaaaauuGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 19880 | 0.66 | 1 |
Target: 5'- uUUAAUCU--UAAUAUCUAAGCUAc-- -3' miRNA: 3'- -AAUUGGAaaAUUGUGGAUUCGAUaua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 11035 | 0.66 | 1 |
Target: 5'- gUUAAagggUUAACACUUAAGUUAUAUa -3' miRNA: 3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 137562 | 0.66 | 1 |
Target: 5'- uUUAACCUUUUGAauCCUaAAGCUuAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUguGGA-UUCGA-UAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 4608 | 0.66 | 1 |
Target: 5'- aUAuCC-UUUAACAUCUAAGCgAUAUa -3' miRNA: 3'- aAUuGGaAAAUUGUGGAUUCGaUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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