miRNA display CGI


Results 1 - 20 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 148614 0.66 1
Target:  5'- uUUAACCcUUUAAUACCUAuaUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 127607 0.66 1
Target:  5'- -aAAUUUgUUAAUGCUUAAGCUAUGUu -3'
miRNA:   3'- aaUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 160882 0.67 1
Target:  5'- ------aUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- aauuggaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23406 0.67 1
Target:  5'- gUUAAagggUUAACACCcAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 39405 0.67 1
Target:  5'- gUUAAaggug-AAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaaaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 84812 0.67 1
Target:  5'- uUUAACCcUUUAAC-UCUuAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAuUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 58804 0.66 1
Target:  5'- --uACUUUUUAACauuuuaaACUUAAGCUAUAa -3'
miRNA:   3'- aauUGGAAAAUUG-------UGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 160975 0.66 1
Target:  5'- -cAACgCUUUaggaguuaaaggggUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- aaUUG-GAAA--------------AUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 5112 0.66 1
Target:  5'- --cACUcUUUAACAUCUAAGCaAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48459 0.66 1
Target:  5'- -cAACCUUUUAGCuCCUAuGGCa---- -3'
miRNA:   3'- aaUUGGAAAAUUGuGGAU-UCGauaua -5'
28269 3' -40.6 NC_005902.1 + 124330 0.66 1
Target:  5'- uUUAAUCUUUUAAUACUUAAaaUAUAUg -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcgAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 109995 0.66 1
Target:  5'- uUUAuCCUUc-AAUAUCUAAGCUAUAUu -3'
miRNA:   3'- -AAUuGGAAaaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23974 0.66 1
Target:  5'- uUUAAUCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 4608 0.66 1
Target:  5'- aUAuCC-UUUAACAUCUAAGCgAUAUa -3'
miRNA:   3'- aAUuGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137562 0.66 1
Target:  5'- uUUAACCUUUUGAauCCUaAAGCUuAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUguGGA-UUCGA-UAUA- -5'
28269 3' -40.6 NC_005902.1 + 11035 0.66 1
Target:  5'- gUUAAagggUUAACACUUAAGUUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 19880 0.66 1
Target:  5'- uUUAAUCU--UAAUAUCUAAGCUAc-- -3'
miRNA:   3'- -AAUUGGAaaAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 169979 0.66 1
Target:  5'- aUUAACCcuu---UAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaauuGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 171082 0.66 1
Target:  5'- uUUAACCUUUUAAU-CCUAAGgUuUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGAUUCgAuAUA- -5'
28269 3' -40.6 NC_005902.1 + 179466 0.66 1
Target:  5'- uUUAAagggUUAACACCUAAGUUAUu- -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.