miRNA display CGI


Results 61 - 80 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 23507 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 100136 0.85 0.766874
Target:  5'- aUAUAUAGCUUAGaUGUUAAAGGGGu -3'
miRNA:   3'- cAUAUAUCGAAUCcACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 80098 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 124421 0.85 0.77715
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 167292 0.85 0.77715
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 134192 0.85 0.77715
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 97477 0.85 0.77715
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 30829 0.85 0.77715
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 100701 0.85 0.77715
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 162576 0.85 0.77715
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc- -3'
miRNA:   3'- -CAUAUAUCgAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 143803 0.84 0.797222
Target:  5'- uGUAUAUAGCUUAGGUGUUaAGAGGu-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAA-UUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 165979 0.84 0.797222
Target:  5'- uGUAUAUGGCUUAuGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 76246 0.84 0.806996
Target:  5'- aUAUAUAaCUUAGGUGUUAAAGGGuGa -3'
miRNA:   3'- cAUAUAUcGAAUCCACAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 146763 0.84 0.816579
Target:  5'- aGUAUAUacauGGUUUAGGUGUUAGAGGGu- -3'
miRNA:   3'- -CAUAUA----UCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 3478 0.84 0.825961
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaucGAGu -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcc-CUC- -5'
28269 5' -43.2 NC_005902.1 + 5422 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 50229 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 156829 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 170619 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 15341 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.