miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 39308 0.91 0.569361
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 170617 0.91 0.569361
Target:  5'- uUAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 50227 0.91 0.580536
Target:  5'- cUAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 17084 0.91 0.580536
Target:  5'- ---gAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uauaUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 67032 0.91 0.580536
Target:  5'- -aGUAUAUAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 50250 0.91 0.580536
Target:  5'- -----cAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uauauaUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 136256 0.91 0.580536
Target:  5'- -aGUAUAUAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 143061 0.9 0.591755
Target:  5'- cAUAUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 131154 0.9 0.591755
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 154624 0.9 0.591755
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 147801 0.9 0.591755
Target:  5'- uUAUAUAUAGCUUAGGUGUUAcAGGa -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUuUCCc -5'
28273 5' -42.1 NC_005902.1 + 106154 0.89 0.648196
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 23506 0.89 0.648196
Target:  5'- uUGUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 29610 0.89 0.648196
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 76682 0.89 0.648196
Target:  5'- uUAUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 48288 0.89 0.648196
Target:  5'- uUAUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 30828 0.89 0.659481
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 85551 0.89 0.659481
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 142364 0.89 0.659481
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 61831 0.89 0.659481
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.