Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28274 | 3' | -40.2 | NC_005902.1 | + | 184442 | 0.7 | 1 |
Target: 5'- ---aAACCCUUUAAcUCUuaagGUGUUGUUa -3' miRNA: 3'- cuaaUUGGGAAAUUuAGG----UACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 181211 | 0.69 | 1 |
Target: 5'- -uUUAGCCCUUUAAcUCCuaaagcGUUGUc -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGua----CAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 177625 | 0.68 | 1 |
Target: 5'- -cUUAACCCUUUAAAUCUuAUGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGG-UACaacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 177363 | 0.7 | 1 |
Target: 5'- uGUUAACCCUUUAAAUCUuAUGg---- -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG-UACaacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 174663 | 0.68 | 1 |
Target: 5'- ----uACCCUUUAAuUCCAUaUUGUUa -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUAcAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 165834 | 0.68 | 1 |
Target: 5'- aGUUAACCCUUUAAAUguuugCUAUGUucacuUGUa -3' miRNA: 3'- cUAAUUGGGAAAUUUA-----GGUACA-----ACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 163442 | 0.71 | 1 |
Target: 5'- uGUUAACCCUUUAAAUCCu------- -3' miRNA: 3'- cUAAUUGGGAAAUUUAGGuacaacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 162101 | 0.68 | 1 |
Target: 5'- gGGUUAACCCaUUAAAUCCAa------ -3' miRNA: 3'- -CUAAUUGGGaAAUUUAGGUacaacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 157909 | 0.69 | 1 |
Target: 5'- aGAUaaauACCCUUUAAcUCCAUGUg--- -3' miRNA: 3'- -CUAau--UGGGAAAUUuAGGUACAacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 140891 | 0.81 | 0.987375 |
Target: 5'- gGGUUAAUCCUUaAAcUCCAUGUUGUUg -3' miRNA: 3'- -CUAAUUGGGAAaUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 139814 | 0.73 | 0.999991 |
Target: 5'- ----uACCUUUUAAcUCCAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 136722 | 0.67 | 1 |
Target: 5'- gGAUaauAUUCUUUAAcUCCAUGUUGUc -3' miRNA: 3'- -CUAau-UGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 113790 | 0.78 | 0.997929 |
Target: 5'- gGAUaauAUCCUUUGAuUCCAUGUUGUUa -3' miRNA: 3'- -CUAau-UGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 97491 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAuUCUAUaUUGUc -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUAcAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 90800 | 0.71 | 1 |
Target: 5'- uGUUAACCCUUUAAAUCCu------- -3' miRNA: 3'- cUAAUUGGGAAAUUUAGGuacaacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 88489 | 0.68 | 1 |
Target: 5'- uGUUAAUCCUUUAAAUCUuaAUGUUu-- -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--UACAAcaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 82109 | 0.76 | 0.999548 |
Target: 5'- ----cACCUUUUAAcUCCAUGUUGUUa -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 81351 | 0.68 | 1 |
Target: 5'- ----uAUCCUUUAAAUCCuaaggGUUGUa -3' miRNA: 3'- cuaauUGGGAAAUUUAGGua---CAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 78883 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAAUCCuagGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 76600 | 0.7 | 1 |
Target: 5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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